Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

21146837 .. 21147259

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG239000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCTTGACATGCTTAAGCAGACCGGACGACCGGAGATGGTTGTTGGGTGGTACCATTCTCACCCTGGATTTGGTTGCTGGCTATCTGGTGTAGACATGAATACACAGCAAAGCTTTGAGGCTTTGAACAAACGTGCTGTGGCTGTGGAGGTGGATCCGATTCAAAGTGTCAAGGGCAAGGTGGTTATGGATGCGTTCCGCCTTATCAACCCCCAAACTATGATGTTTGGTCAAGAACCGAGGCAGACCACATCCAATATAGGGCATCTCAATAAGCCATCCATTCAAGCGTTGGTGCATGGGTTAAACCGACATTATTATTCCATAGCGATTAACTACAGGAAGAATGAACTTGAGGAGAAGAGTTGCTTAATCTTCATAAGAAGAATTGGGCAGATGGGCTACTCATTCAAAGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

140

Amino Acids

16.05

Weight (kDa)

9.36

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	1 - 43	2.1e-13	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	2 cut(s)	149, 162
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	71, 261
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	4 cut(s)	127, 164, 287, 412
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
AlwI	GGATC	2 cut(s)	149, 162
Asp718I	GGTACC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	51
BccI	CCATC	3 cut(s)	31, 286, 391
BciT130I	CCWGG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	337
BfrI	CTTAAG	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	53, 156
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	2 cut(s)	181, 274
BpuEI	CTTGAG	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	64, 239
BsaWI	WCCGGW	2 cut(s)	23, 31
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 261
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	64, 239
BseGI	GGATG	3 cut(s)	196, 251, 278
BseLI	CCNNNNNNNGG	2 cut(s)	71, 261
BseRI	GAGGAG	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	24, 32
BslI	CCNNNNNNNGG	2 cut(s)	71, 261
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	53, 156
BspPI	GGATC	2 cut(s)	149, 162
BspT107I	GGYRCC	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	64, 239
BssMI	GATC	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	356
BstAFI	CTTAAG	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	196, 251, 278
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	196, 251, 278
Cac8I	GCNNGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	3 cut(s)	10, 97, 299
CviJI	RGCY	6 cut(s)	82, 114, 122, 143, 277, 402
CviKI_1	RGCY	6 cut(s)	82, 114, 122, 143, 277, 402
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EciI	GGCGGA	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	64
FaeI	CATG	3 cut(s)	13, 100, 302
FaiI	YATR	8 cut(s)	11, 98, 188, 221, 260, 300, 326, 380
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	3 cut(s)	9, 96, 298
FblI	GTMKAC	1 cut(s)	93
FokI	GGATG	3 cut(s)	203, 238, 265
HapII	CCGG	2 cut(s)	24, 32
Hin1II	CATG	3 cut(s)	13, 100, 302
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	2 cut(s)	24, 32
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	3 cut(s)	13, 100, 302
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	37, 45, 51, 64, 72, 78, 325
LweI	GCATC	2 cut(s)	181, 274
MaeII	ACGT	1 cut(s)	133
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	4 cut(s)	355, 367, 373, 396
MflI	RGATCY	1 cut(s)	154
MluCI	AATT	1 cut(s)	387
MnlI	CCTC	4 cut(s)	112, 142, 234, 349
MseI	TTAA	4 cut(s)	15, 305, 333, 371
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	2 cut(s)	24, 32
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	13, 100, 302
NlaIV	GGNNCC	2 cut(s)	53, 156
NspI	RCATGY	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	53, 156
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	4 cut(s)	15, 305, 333, 371
Sau3AI	GATC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	4 cut(s)	116, 136, 153, 183
SfaNI	GCATC	2 cut(s)	181, 274
SfcI	CTRYAG	1 cut(s)	337
SmlI	CTYRAG	2 cut(s)	14, 353
SmoI	CTYRAG	2 cut(s)	14, 353
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	64
TaiI	ACGT	1 cut(s)	136
TasI	AATT	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	4 cut(s)	15, 305, 333, 371
Tru9I	TTAA	4 cut(s)	15, 305, 333, 371
TspDTI	ATGAA	3 cut(s)	113, 363, 367
Vha464I	CTTAAG	1 cut(s)	14
XceI	RCATGY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	2 cut(s)	62, 289
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.