Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

18574470 .. 18575536

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATGCTTGGCCAAGAACCACGGCAGACCACGTCCAATCTCGGGCATCTAAATAAGCCATCAATTCAAGCCTTGATCCATGGGTTAAATCGTCATTATTACTCCATAGCAATTAATTACCGGAAGAATGAACTCGAGGAGAAAATGTTGCTTTACCTTCACAAGAAGAAATGGACAGATGGGCCGACACTAAAGCGATTTGACACTCATTCAAAAACAAATGAGCAAACAGTTCAGGAGATGTTAAATCTAGCTGTTAAATACAACAAGGCAGTGCAGGAGGAGGATGAGCTGCCACCAGAGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCTAAGAAGCACCTTGAAGAGCATGTCTCCAACTTAATGTCCTCAAACATTGTCCAGACCTTGGGCACAATGCTTGATACTGTGGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

142

Amino Acids

16.37

Weight (kDa)

7.98

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN11_C	PF23594	63 - 140	1.5e-34	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	397
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	42, 397
AgsI	TTSAA	3 cut(s)	68, 213, 353
AjiI	CACGTC	1 cut(s)	33
AluBI	AGCT	3 cut(s)	254, 292, 307
AluI	AGCT	3 cut(s)	254, 292, 307
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	70
Ama87I	CYCGRG	2 cut(s)	41, 134
AoxI	GGCC	2 cut(s)	10, 182
ApeKI	GCWGC	1 cut(s)	292
AseI	ATTAAT	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	182
AvaI	CYCGRG	2 cut(s)	41, 134
BaeGI	GKGCMC	1 cut(s)	404
BaeI	ACNNNNGTAYC	1 cut(s)	405
BalI	TGGCCA	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	2 cut(s)	67, 173
BceAI	ACGGC	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	251, 427
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
BmeT110I	CYCGRG	2 cut(s)	41, 134
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	182
BmsI	GCATC	2 cut(s)	55, 325
BpiI	GAAGAC	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BsaJI	CCNNGG	3 cut(s)	20, 79, 396
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 397
BseDI	CCNNGG	3 cut(s)	20, 79, 396
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	42, 397
BseRI	GAGGAG	2 cut(s)	152, 296
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	2 cut(s)	12, 184
BsiHKCI	CYCGRG	2 cut(s)	41, 134
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	42, 397
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	12, 184
BsoBI	CYCGRG	2 cut(s)	41, 134
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	79
BspANI	GGCC	2 cut(s)	12, 184
BspPI	GGATC	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	348
BssECI	CCNNGG	3 cut(s)	20, 79, 396
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	79, 396
Bst4CI	ACNGT	2 cut(s)	232, 418
Bst6I	CTCTTC	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	339
BstDSI	CCRYGG	2 cut(s)	20, 79
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	12, 184
BtgI	CCRYGG	2 cut(s)	20, 79
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	2 cut(s)	80, 359
CviJI	RGCY	7 cut(s)	12, 58, 71, 184, 254, 292, 307
CviKI_1	RGCY	7 cut(s)	12, 58, 71, 184, 254, 292, 307
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	79, 396
Eco88I	CYCGRG	2 cut(s)	41, 134
EcoT14I	CCWWGG	2 cut(s)	79, 396
ErhI	CCWWGG	2 cut(s)	79, 396
FaeI	CATG	2 cut(s)	83, 362
FaiI	YATR	3 cut(s)	81, 107, 360
FatI	CATG	2 cut(s)	79, 358
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	2 cut(s)	251, 427
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	12, 184
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	2 cut(s)	83, 362
HindIII	AAGCTT	1 cut(s)	305
HpaII	CCGG	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	236, 391
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	232, 418
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	277, 311, 317
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	83, 362
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	1 cut(s)	348
LpnPI	CCDG	5 cut(s)	134, 221, 263, 312, 404
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	2 cut(s)	55, 325
MaeI	CTAG	2 cut(s)	251, 427
MaeII	ACGT	1 cut(s)	32
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	136, 178, 339, 365
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	404
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	4 cut(s)	63, 111, 115, 312
MluNI	TGGCCA	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	4 cut(s)	130, 274, 277, 388
Mox20I	TGGCCA	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	5 cut(s)	86, 114, 245, 258, 371
Msp20I	TGGCCA	1 cut(s)	12
MspI	CCGG	1 cut(s)	121
MunI	CAATTG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	83, 362
NspI	RCATGY	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	348
PflFI	GACNNNGTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	182
PspXI	VCTCGAGB	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	5 cut(s)	86, 114, 245, 258, 371
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	7 cut(s)	35, 159, 256, 294, 309, 351, 398
SfaNI	GCATC	2 cut(s)	55, 325
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	63, 111, 115, 312
SspMI	CTAG	2 cut(s)	251, 427
StyI	CCWWGG	2 cut(s)	79, 396
TaaI	ACNGT	2 cut(s)	232, 418
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	135
TasI	AATT	4 cut(s)	63, 111, 115, 312
Tru1I	TTAA	5 cut(s)	86, 114, 245, 258, 371
Tru9I	TTAA	5 cut(s)	86, 114, 245, 258, 371
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	279
Tth111I	GACNNNGTC	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	397
VspI	ATTAAT	1 cut(s)	114
XceI	RCATGY	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	134
XspI	CTAG	2 cut(s)	251, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.