Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

13700941 .. 13704819

Gene Structure 3879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG117900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCATTGGCTGCAAGAGGTGAGGGTCCAGCTATCGGTATCGACCTTGGAACAACTTACTCATGCGTTGGTGTTTGGCAACATGATCGTGTTGAGATCATTGCCAATGATCAAGGAAACAGAACGACACCGTCATGTGTTGCTTTTACCAACACCGGGCGTTTGGTTGGTGATGCTGCCAAGAACCAGGCTTCTATGAACCCCATCAACACTATTTTTGCAATTAATTACGGGAAGAATGAACTTAAGGACAAGATGTTGCTTAACCTTTACAAGAGGTTAGTGAAGGAACCTGAATGTAGTGGTCTGAGCTTTGAAGCTTTGAATCAACGGGCTGTAGCTGTAGTGGTGGATCCAATTCAGAGCGTGAAGGGGAAGGCCTTGATCCATGGGTTAAATCGTCATTATTACTCCATAGCAATTAATTACCGGAAGAATGAACTCGAGGAGAAAATGTTGCTTAACCTTCACAAGAAGAAATGGACAGATGGGCCGACACTAAAGCGATTTGACACTCATTCAAAAACAAATGAGCAAACAGTTCAGGAGATGTTAAATCTAGCTGTTAAATACAACAAGGCAGTGCAGGAGGAGAATGAGCTGCCACCAGAGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCTAAGAAGCACCTTGAAGAGCATGTCTCCAACTTAATGTCCTCAAACATTGTCCAGACCTTGGGCACAATGCTTGATACTGTGGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

245

Amino Acids

27.32

Weight (kDa)

8.64

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	11 - 75	5.4e-27	Hsp70 protein
RPN11_C	PF23594	166 - 243	1.2e-33	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	706
AclWI	GGATC	3 cut(s)	347, 360, 379
AfiI	CCNNNNNNNGG	3 cut(s)	35, 156, 706
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	317, 325, 522, 662
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	7 cut(s)	32, 312, 320, 341, 563, 601, 616
AluI	AGCT	7 cut(s)	32, 312, 320, 341, 563, 601, 616
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	3 cut(s)	347, 360, 379
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	378, 491
ApeKI	GCWGC	3 cut(s)	11, 176, 601
AseI	ATTAAT	2 cut(s)	225, 423
AspS9I	GGNCC	2 cut(s)	26, 491
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	32, 182
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	713
BaeI	ACNNNNGTAYC	1 cut(s)	714
BamHI	GGATCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	163, 588
BccI	CCATC	2 cut(s)	212, 482
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	2 cut(s)	560, 736
BfmI	CTRYAG	2 cut(s)	336, 342
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	3 cut(s)	12, 177, 602
BlsI	GCNGC	3 cut(s)	13, 178, 603
Bme1390I	CCNGG	2 cut(s)	157, 188
Bme18I	GGWCC	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	26, 491
BmiI	GGNNCC	3 cut(s)	27, 291, 354
BmrFI	CCNGG	2 cut(s)	157, 188
BmsI	GCATC	2 cut(s)	163, 634
BpiI	GAAGAC	1 cut(s)	643
BplI	GAGNNNNNCTC	2 cut(s)	656, 688
BpuMI	CCSGG	1 cut(s)	157
BsaJI	CCNNGG	3 cut(s)	46, 388, 705
BsaWI	WCCGGW	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 156, 706
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	46, 388, 705
BseLI	CCNNNNNNNGG	3 cut(s)	35, 156, 706
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	299
BseRI	GAGGAG	2 cut(s)	461, 605
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	2 cut(s)	163, 588
BsgI	GTGCAG	1 cut(s)	605
BshFI	GGCC	2 cut(s)	380, 493
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	156, 430
BslI	CCNNNNNNNGG	3 cut(s)	35, 156, 706
BsmAI	GTCTC	1 cut(s)	676
BsnI	GGCC	2 cut(s)	380, 493
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	5 cut(s)	85, 96, 109, 352, 384
Bsp19I	CCATGG	1 cut(s)	388
BspANI	GGCC	2 cut(s)	380, 493
BspCNI	CTCAG	1 cut(s)	300
BspLI	GGNNCC	3 cut(s)	27, 291, 354
BspPI	GGATC	3 cut(s)	347, 360, 379
BspQI	GCTCTTC	1 cut(s)	657
BspTI	CTTAAG	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	3 cut(s)	46, 388, 705
BssMI	GATC	5 cut(s)	85, 96, 109, 352, 384
BssT1I	CCWWGG	3 cut(s)	46, 388, 705
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	132, 541, 727
Bst6I	CTCTTC	1 cut(s)	657
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	2 cut(s)	308, 648
BstDSI	CCRYGG	1 cut(s)	388
BstKTI	GATC	5 cut(s)	88, 99, 112, 355, 387
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	5 cut(s)	85, 96, 109, 352, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	155, 186
BstSFI	CTRYAG	2 cut(s)	336, 342
BstSLI	GKGCMC	1 cut(s)	713
BstV1I	GCAGC	2 cut(s)	163, 588
BstV2I	GAAGAC	1 cut(s)	643
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	380, 493
BtgI	CCRYGG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	1 cut(s)	618
Cfr13I	GGNCC	2 cut(s)	26, 491
CviAII	CATG	5 cut(s)	63, 83, 135, 389, 668
DdeI	CTNAG	2 cut(s)	308, 648
DpnI	GATC	5 cut(s)	87, 98, 111, 354, 386
DpnII	GATC	5 cut(s)	85, 96, 109, 352, 384
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco130I	CCWWGG	3 cut(s)	46, 388, 705
Eco147I	AGGCCT	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	3 cut(s)	46, 388, 705
ErhI	CCWWGG	3 cut(s)	46, 388, 705
FaeI	CATG	5 cut(s)	66, 86, 138, 392, 671
FaiI	YATR	7 cut(s)	64, 84, 136, 197, 390, 416, 669
FatI	CATG	5 cut(s)	62, 82, 134, 388, 667
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	12, 177, 602
Fsp4HI	GCNGC	3 cut(s)	12, 177, 602
FspBI	CTAG	2 cut(s)	560, 736
GluI	GCNGC	3 cut(s)	12, 177, 602
HaeIII	GGCC	2 cut(s)	380, 493
HapII	CCGG	2 cut(s)	156, 430
Hin1II	CATG	5 cut(s)	66, 86, 138, 392, 671
HindIII	AAGCTT	2 cut(s)	318, 614
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	2 cut(s)	156, 430
HphI	GGTGA	2 cut(s)	32, 182
Hpy188I	TCNGA	2 cut(s)	309, 363
Hpy188III	TCNNGA	2 cut(s)	545, 700
HpyAV	CCTTC	4 cut(s)	280, 364, 370, 476
HpyCH4III	ACNGT	3 cut(s)	132, 541, 727
HpyCH4V	TGCA	5 cut(s)	14, 221, 586, 620, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	308, 648
Hsp92II	CATG	5 cut(s)	66, 86, 138, 392, 671
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	5 cut(s)	85, 96, 109, 352, 384
LguI	GCTCTTC	1 cut(s)	657
Lsp1109I	GCAGC	2 cut(s)	163, 588
LweI	GCATC	2 cut(s)	163, 634
MaeI	CTAG	2 cut(s)	560, 736
MalI	GATC	5 cut(s)	87, 98, 111, 354, 386
MboI	GATC	5 cut(s)	85, 96, 109, 352, 384
MboII	GAAGA	5 cut(s)	247, 445, 487, 648, 674
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	713
MluCI	AATT	6 cut(s)	222, 226, 357, 420, 424, 621
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	6 cut(s)	11, 16, 270, 439, 583, 697
MseI	TTAA	9 cut(s)	225, 246, 264, 395, 423, 462, 554, 567, 680
MslI	CAYNNNNRTG	2 cut(s)	87, 133
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	2 cut(s)	156, 430
MspR9I	CCNGG	2 cut(s)	157, 188
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	5 cut(s)	85, 96, 109, 352, 384
NlaIII	CATG	5 cut(s)	66, 86, 138, 392, 671
NlaIV	GGNNCC	3 cut(s)	27, 291, 354
NspI	RCATGY	1 cut(s)	671
PaeR7I	CTCGAG	1 cut(s)	443
PceI	AGGCCT	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	325
PflFI	GACNNNGTC	1 cut(s)	130
PflMI	CCANNNNNTGG	1 cut(s)	706
PkrI	GCNGC	3 cut(s)	13, 178, 603
PshBI	ATTAAT	2 cut(s)	225, 423
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	3 cut(s)	27, 291, 354
PspPI	GGNCC	2 cut(s)	26, 491
PspXI	VCTCGAGB	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	352
PsyI	GACNNNGTC	1 cut(s)	130
RseI	CAYNNNNRTG	2 cut(s)	87, 133
SapI	GCTCTTC	1 cut(s)	657
SaqAI	TTAA	9 cut(s)	225, 246, 264, 395, 423, 462, 554, 567, 680
SatI	GCNGC	3 cut(s)	12, 177, 602
Sau3AI	GATC	5 cut(s)	85, 96, 109, 352, 384
Sau96I	GGNCC	2 cut(s)	26, 491
ScrFI	CCNGG	2 cut(s)	157, 188
SduI	GDGCHC	1 cut(s)	713
SfaNI	GCATC	2 cut(s)	163, 634
SfcI	CTRYAG	2 cut(s)	336, 342
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	87, 133
SmlI	CTYRAG	2 cut(s)	245, 443
SmoI	CTYRAG	2 cut(s)	245, 443
Sse9I	AATT	6 cut(s)	222, 226, 357, 420, 424, 621
SseBI	AGGCCT	1 cut(s)	380
SspMI	CTAG	2 cut(s)	560, 736
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	155, 186
StyI	CCWWGG	3 cut(s)	46, 388, 705
TaaI	ACNGT	3 cut(s)	132, 541, 727
TaqI	TCGA	2 cut(s)	42, 444
TasI	AATT	6 cut(s)	222, 226, 357, 420, 424, 621
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	9 cut(s)	225, 246, 264, 395, 423, 462, 554, 567, 680
Tru9I	TTAA	9 cut(s)	225, 246, 264, 395, 423, 462, 554, 567, 680
TscAI	CASTG	1 cut(s)	588
TseI	GCWGC	3 cut(s)	11, 176, 601
TspDTI	ATGAA	3 cut(s)	212, 255, 453
TspRI	CASTG	1 cut(s)	588
Tth111I	GACNNNGTC	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	706
Vha464I	CTTAAG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	26
VspI	ATTAAT	2 cut(s)	225, 423
XceI	RCATGY	1 cut(s)	671
XhoI	CTCGAG	1 cut(s)	443
XspI	CTAG	2 cut(s)	560, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.