Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

22858512 .. 22861090

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGTATTACCTCCATTCCCAAATTGCCTGGCGTTGACTCATCGGAGGAAGGTGAAGAAGATAGTGGCTATGTTGTGGATGAGTACACTGTTCGAGTTGTGGATGTCTTTGCTATGTCACAGAGTGGTACTGGTGTTAGTGTTGAAGCAGTGGATCATGTGTTCCAGACTAACATGCTCGATATGCTTAAGCAGATTGGAAGACCGGAGATGGTTGTAGGGTGGTACCATTCGCATGCTAGATTTGGCTGTTGGCTATCTGGTGTAGACATTAATACACAGCAGAGCTTTGAAGCTTTGAATCAACATGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGAGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGATGCTCGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTAACCTTCATAAGAAGGGACAGTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

158

Amino Acids

17.76

Weight (kDa)

5.3

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	23 - 102	2.1e-21	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	373
AclWI	GGATC	3 cut(s)	162, 323, 336
AdeI	CACNNNGTG	1 cut(s)	125
AfaI	GTAC	3 cut(s)	86, 130, 227
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	146, 293, 301
AjnI	CCWGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	2 cut(s)	288, 296
AluI	AGCT	2 cut(s)	288, 296
AlwI	GGATC	3 cut(s)	162, 323, 336
Ama87I	CYCGRG	1 cut(s)	428
ArsI	GACNNNNNNTTYG	1 cut(s)	456
AseI	ATTAAT	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	428
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BamHI	GGATCC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	208
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	30
BfaI	CTAG	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	227, 330
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	2 cut(s)	355, 387
BpiI	GAAGAC	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	85, 109
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	446
BshNI	GGYRCC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	428
Bsp143I	GATC	2 cut(s)	154, 328
BspACI	CCGC	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	227, 330
BspPI	GGATC	3 cut(s)	162, 323, 336
BspT107I	GGYRCC	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	154, 328
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	91, 468
Bst6I	CTCTTC	1 cut(s)	341
BstAFI	CTTAAG	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	237, 402
BstF5I	GGATG	2 cut(s)	85, 109
BstKTI	GATC	2 cut(s)	157, 331
BstMBI	GATC	2 cut(s)	154, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	3 cut(s)	178, 239, 311
BstSCI	CCNGG	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	85, 109
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	87, 156
Cac8I	GCNNGC	2 cut(s)	237, 402
Csp6I	GTAC	3 cut(s)	85, 129, 226
CviAII	CATG	4 cut(s)	158, 175, 236, 308
CviJI	RGCY	5 cut(s)	69, 249, 256, 288, 296
CviKI_1	RGCY	5 cut(s)	69, 249, 256, 288, 296
CviQI	GTAC	3 cut(s)	85, 129, 226
DpnI	GATC	2 cut(s)	156, 330
DpnII	GATC	2 cut(s)	154, 328
DraIII	CACNNNGTG	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	28
FaeI	CATG	4 cut(s)	161, 178, 239, 311
FaiI	YATR	9 cut(s)	72, 116, 159, 176, 185, 237, 309, 395, 456
FatI	CATG	4 cut(s)	157, 174, 235, 307
FblI	GTMKAC	1 cut(s)	267
FokI	GGATG	2 cut(s)	92, 116
FspBI	CTAG	1 cut(s)	240
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	4 cut(s)	161, 178, 239, 311
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	2 cut(s)	38, 301
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	3 cut(s)	37, 87, 268
Hpy188I	TCNGA	2 cut(s)	46, 339
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	3 cut(s)	37, 87, 268
HpyAV	CCTTC	5 cut(s)	44, 346, 379, 454, 461
HpyCH4III	ACNGT	2 cut(s)	91, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
Hsp92II	CATG	4 cut(s)	161, 178, 239, 311
KpnI	GGTACC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	154, 328
LpnPI	CCDG	7 cut(s)	15, 42, 117, 179, 219, 246, 400
LweI	GCATC	2 cut(s)	355, 387
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	2 cut(s)	156, 330
MboI	GATC	2 cut(s)	154, 328
MboII	GAAGA	6 cut(s)	68, 71, 213, 358, 430, 448
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	3 cut(s)	23, 333, 409
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	4 cut(s)	22, 40, 342, 424
MseI	TTAA	3 cut(s)	189, 273, 447
MslI	CAYNNNNRTG	1 cut(s)	234
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	2 cut(s)	154, 328
NlaIII	CATG	4 cut(s)	161, 178, 239, 311
NlaIV	GGNNCC	2 cut(s)	227, 330
NmuCI	GTSAC	1 cut(s)	117
NspI	RCATGY	3 cut(s)	178, 239, 311
PaeI	GCATGC	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	227, 330
PspXI	VCTCGAGB	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	3 cut(s)	86, 130, 227
RsaNI	GTAC	3 cut(s)	85, 129, 226
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	189, 273, 447
Sau3AI	GATC	2 cut(s)	154, 328
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	6 cut(s)	14, 55, 290, 298, 357, 453
SfaNI	GCATC	2 cut(s)	355, 387
Sfr274I	CTCGAG	1 cut(s)	428
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	188, 428
SmoI	CTYRAG	2 cut(s)	188, 428
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	3 cut(s)	23, 333, 409
SsiI	CCGC	1 cut(s)	373
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	91, 468
TaqI	TCGA	3 cut(s)	94, 180, 429
TasI	AATT	3 cut(s)	23, 333, 409
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	3 cut(s)	189, 273, 447
Tru9I	TTAA	3 cut(s)	189, 273, 447
TscAI	CASTG	2 cut(s)	94, 156
TseFI	GTSAC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	438, 443
TspRI	CASTG	2 cut(s)	94, 156
Vha464I	CTTAAG	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	273
XceI	RCATGY	3 cut(s)	178, 239, 311
XhoI	CTCGAG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.