Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

41154159 .. 41171416

Gene Structure 17258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG244500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATGAAGATCCTGCTGAGTGAAGATATTATAGGAGGGTATAAGGGCCTCAGCACTGCTTTAGCATTGTCAAATGCCATCACAAATCTAGCAGCAACGGTTTTTGGAGAGCTGTGGAAACTGGAACCACTATCTGAAGAGAGGAAAACAAAATGGCAAAGAGAAATGGACTGGAAAAATGGTGCTAATGGCCGGACATTAGAGATTATGACTCCGAAAGCTCGTGCAGACATACACATCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCATTGGTGGTTACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGCTTTGAATCAACATGTTGTTGCTGTGGTGGTGGATCCAATTCAAAGTGTGAAGAGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGATGCTCGTTCAAGAACCTCGGCAGACCACATCTAATCTGGGCCATCTTAATAAACCATCTATTCAAGACTCTGTCCTTTACACTATTCTTGATTATGCCTTGAAGGATCAAGAAATGTGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

195

Amino Acids

21.78

Weight (kDa)

6.84

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	2 - 118	1e-45	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	4 cut(s)	4, 389, 402, 576
AcoI	YGGCCR	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	156
AflII	CTTAAG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	6 cut(s)	281, 367, 404, 473, 527, 565
AluBI	AGCT	3 cut(s)	112, 221, 362
AluI	AGCT	3 cut(s)	112, 221, 362
AlwI	GGATC	4 cut(s)	4, 389, 402, 576
AoxI	GGCC	3 cut(s)	46, 190, 502
ApeKI	GCWGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	46, 502
BamHI	GGATCC	1 cut(s)	394
BauI	CACGAG	1 cut(s)	222
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	3 cut(s)	86, 513, 526
BfaI	CTAG	1 cut(s)	89
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	46, 502
BmiI	GGNNCC	2 cut(s)	126, 396
BmsI	GCATC	3 cut(s)	261, 421, 453
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	479
Bse1I	ACTGG	2 cut(s)	126, 176
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	479
BseJI	GATNNNNATC	1 cut(s)	8
BseMII	CTCAG	3 cut(s)	8, 64, 297
BseNI	ACTGG	2 cut(s)	126, 176
BseXI	GCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	48, 192, 504
BsiSI	CCGG	1 cut(s)	193
BsnI	GGCC	3 cut(s)	48, 192, 504
Bsp143I	GATC	3 cut(s)	9, 394, 568
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	3 cut(s)	48, 192, 504
BspCNI	CTCAG	3 cut(s)	9, 63, 298
BspLI	GGNNCC	2 cut(s)	126, 396
BspPI	GGATC	4 cut(s)	4, 389, 402, 576
BspTI	CTTAAG	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	126, 176
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	3 cut(s)	9, 394, 568
BssSI	CACGAG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	132, 407
BstAFI	CTTAAG	1 cut(s)	254
BstDEI	CTNAG	3 cut(s)	17, 50, 306
BstKTI	GATC	3 cut(s)	12, 397, 571
BstMBI	GATC	3 cut(s)	9, 394, 568
BstNSI	RCATGY	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	9, 394
BstYI	RGATCY	2 cut(s)	9, 394
BsuRI	GGCC	3 cut(s)	48, 192, 504
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	46, 502
CviAII	CATG	2 cut(s)	374, 585
CviJI	RGCY	6 cut(s)	48, 112, 192, 221, 362, 504
CviKI_1	RGCY	6 cut(s)	48, 112, 192, 221, 362, 504
DdeI	CTNAG	3 cut(s)	17, 50, 306
DpnI	GATC	3 cut(s)	11, 396, 570
DpnII	GATC	3 cut(s)	9, 394, 568
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	132, 407
EarI	CTCTTC	2 cut(s)	132, 407
EciI	GGCGGA	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	46
FaeI	CATG	2 cut(s)	377, 588
FaiI	YATR	9 cut(s)	32, 42, 209, 233, 318, 375, 461, 558, 586
FatI	CATG	2 cut(s)	373, 584
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	48, 192, 504
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	2 cut(s)	377, 588
HinfI	GANTC	5 cut(s)	211, 266, 290, 367, 530
HpaII	CCGG	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	136, 216
Hpy188III	TCNNGA	4 cut(s)	473, 527, 551, 572
HpyAV	CCTTC	5 cut(s)	317, 335, 412, 445, 559
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	227, 584
HpyF3I	CTNAG	3 cut(s)	17, 50, 306
Hsp92II	CATG	2 cut(s)	377, 588
Kzo9I	GATC	3 cut(s)	9, 394, 568
LpnPI	CCDG	8 cut(s)	26, 107, 157, 206, 261, 319, 372, 485
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	3 cut(s)	261, 421, 453
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	3 cut(s)	11, 396, 570
MboI	GATC	3 cut(s)	9, 394, 568
MboII	GAAGA	5 cut(s)	19, 35, 149, 236, 424
MflI	RGATCY	2 cut(s)	9, 394
MluCI	AATT	1 cut(s)	399
MlyI	GAGTC	3 cut(s)	205, 260, 524
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	29, 59, 135, 408, 489
MseI	TTAA	2 cut(s)	255, 510
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	1 cut(s)	193
NdeII	GATC	3 cut(s)	9, 394, 568
NlaIII	CATG	2 cut(s)	377, 588
NlaIV	GGNNCC	2 cut(s)	126, 396
NmeAIII	GCCGAG	1 cut(s)	460
NspI	RCATGY	1 cut(s)	377
PciI	ACATGT	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	290, 367
PflFI	GACNNNGTC	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	3 cut(s)	205, 260, 524
PpsI	GAGTC	3 cut(s)	205, 260, 524
PscI	ACATGT	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	126, 396
PspPI	GGNCC	2 cut(s)	46, 502
PsuI	RGATCY	2 cut(s)	9, 394
PsyI	GACNNNGTC	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	255, 510
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	3 cut(s)	9, 394, 568
Sau96I	GGNCC	2 cut(s)	46, 502
SchI	GAGTC	3 cut(s)	205, 260, 524
SetI	ASST	6 cut(s)	114, 223, 328, 364, 423, 481
SfaNI	GCATC	3 cut(s)	261, 421, 453
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	399
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	399
TfiI	GAWTC	2 cut(s)	290, 367
Tru1I	TTAA	2 cut(s)	255, 510
Tru9I	TTAA	2 cut(s)	255, 510
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	20, 282
TspRI	CASTG	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	533
Vha464I	CTTAAG	1 cut(s)	254
XceI	RCATGY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.