Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

25265644 .. 25265868

Gene Structure 225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG259200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGATGAGAGGCTTCAGAGGATGCTTGGAGGGGCTTTGGGCCACCCACGACCCGATTCACCCTCCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCACTGGCCCTCCTCAAAATGCTAAAGCATGGAAGAGCGGGGGTTCCTATGGAGGTCATGGGGTTGATGCTCGGTGAGTTCGTGGACGATTACACAGTTCGTGTGGTTGATGTCTTTGCAATGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

74

Amino Acids

8.16

Weight (kDa)

5.1

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	25 - 74	7.5e-12	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	40, 102
AspS9I	GGNCC	2 cut(s)	40, 103
AsuHPI	GGTGA	2 cut(s)	51, 182
BceAI	ACGGC	1 cut(s)	205
BfuAI	ACCTGC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	40, 103
BmiI	GGNNCC	1 cut(s)	141
BmsI	GCATC	2 cut(s)	12, 153
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	10, 27
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	2 cut(s)	85, 98
BshFI	GGCC	2 cut(s)	42, 104
BsnI	GGCC	2 cut(s)	42, 104
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	2 cut(s)	42, 104
BspLI	GGNNCC	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	73
BspQI	GCTCTTC	1 cut(s)	124
BsrBI	CCGCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	10, 27
BsuRI	GGCC	2 cut(s)	42, 104
BtsCI	GGATG	2 cut(s)	10, 27
BtsIMutI	CAGTG	1 cut(s)	98
BveI	ACCTGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	40, 103
CviAII	CATG	2 cut(s)	125, 154
CviJI	RGCY	4 cut(s)	13, 35, 42, 104
CviKI_1	RGCY	4 cut(s)	13, 35, 42, 104
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	128, 157
FaiI	YATR	3 cut(s)	126, 146, 155
FatI	CATG	2 cut(s)	124, 153
FauI	CCCGC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	2 cut(s)	17, 34
HaeIII	GGCC	2 cut(s)	42, 104
Hin1II	CATG	2 cut(s)	128, 157
HinfI	GANTC	2 cut(s)	56, 71
HphI	GGTGA	2 cut(s)	51, 182
Hpy166II	GTNNAC	2 cut(s)	88, 181
Hpy188I	TCNGA	2 cut(s)	18, 79
Hpy8I	GTNNAC	2 cut(s)	88, 181
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	128, 157
LguI	GCTCTTC	1 cut(s)	124
LpnPI	CCDG	2 cut(s)	68, 86
LweI	GCATC	2 cut(s)	12, 153
MbiI	CCGCTC	1 cut(s)	134
MboII	GAAGA	1 cut(s)	141
NlaIII	CATG	2 cut(s)	128, 157
NlaIV	GGNNCC	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 174
PfeI	GAWTC	2 cut(s)	56, 71
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	40, 103
SapI	GCTCTTC	1 cut(s)	124
Sau96I	GGNCC	2 cut(s)	40, 103
SetI	ASST	2 cut(s)	87, 153
SfaNI	GCATC	2 cut(s)	12, 153
SsiI	CCGC	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	56, 71
TscAI	CASTG	1 cut(s)	105
TspRI	CASTG	1 cut(s)	105
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.