Prupe.5G147900_v2.0.a1

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
13542960 .. 13544053
1094 bp
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UTR
Exon/CDS
Intron
Prupe.5G147900.1

Sequence Viewer

Length: 294 bp
ATGCTGCTTAGCCTTCGTCAGAAGAAGAAGTTGACTGATGGGCTGATGCTCAAGCCATTTGATGCCCATTCAAAAACAAATGAGCAAACTATTAAGGAAATGTCAACCTTGGCTATGCGATACATCACCGCAGTGCAGGAGGAATACGAGGAGGAAGATGAACCAGAGAAGCTTGCAATTGCTAAGGTGGGAAGGAAAGATGCCAAGAAACACCTTGAGCAACTTGTCTCCAACTTGATGTCCTCAAACATAGGCCAGACTTTTGGAGCAATGCTTGATACTGTTGTCTTCTAG

Protein Analysis

98

Amino Acids

11.03

Weight (kDa)

6.11

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AgsI TTSAA 1 cut(s) 72
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 232
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 118
BaeI ACNNNNGTAYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 280
BccI CCATC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 292
BisI GCNGC 1 cut(s) 5
BlpI GCTNAGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 6
BmsI GCATC 3 cut(s) 36, 52, 190
BpiI GAAGAC 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 8
BpuEI CTTGAG 2 cut(s) 35, 236
BsaJI CCNNGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 1 cut(s) 255
Bsp1720I GCTNAGC 1 cut(s) 8
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 8, 183
BstMAI GTCTC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 263
BsuRI GGCC 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 174
CviJI RGCY 6 cut(s) 12, 43, 55, 113, 172, 255
CviKI_1 RGCY 6 cut(s) 12, 43, 55, 113, 172, 255
DdeI CTNAG 2 cut(s) 8, 183
Eco130I CCWWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaiI YATR 2 cut(s) 116, 251
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 292
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 255
HincII GTYRAC 2 cut(s) 33, 105
HindII GTYRAC 2 cut(s) 33, 105
HindIII AAGCTT 1 cut(s) 170
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 33, 105
Hpy188I TCNGA 1 cut(s) 21
Hpy8I GTNNAC 2 cut(s) 33, 105
HpyAV CCTTC 2 cut(s) 23, 186
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 136, 176
HpyF3I CTNAG 2 cut(s) 8, 183
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 3 cut(s) 122, 177, 269
LweI GCATC 3 cut(s) 36, 52, 190
MaeI CTAG 1 cut(s) 292
MboII GAAGA 4 cut(s) 34, 37, 167, 280
MfeI CAATTG 1 cut(s) 177
MluCI AATT 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 4 cut(s) 133, 142, 145, 253
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 131
MunI CAATTG 1 cut(s) 177
OliI CACNNNNGTG 1 cut(s) 131
PkrI GCNGC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 1 cut(s) 5
SetI ASST 4 cut(s) 110, 174, 189, 216
SfaNI GCATC 3 cut(s) 36, 52, 190
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 50, 215
SmoI CTYRAG 2 cut(s) 50, 215
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 283
TasI AATT 1 cut(s) 177
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 138
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 138
XspI CTAG 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.