Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

13715041 .. 13720888

Gene Structure 5848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG118000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCAGGTATGGAGAGGCTGCAGAGAATGTTCGCCGGTGCCGGAGGAGCTCTGGGCCACCCGCCGCCCGACTCCCCCACCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCTTGGCGCTCCTCAAAATGCTCAAGCACGGAAGAGCTGGGGTTCCTATGGAGGTCATGGGATTGATGCTGGGAGAGTTTGTGGATGAATACACTGTTCGTGTTGTTGACGTCTTTGCGATGCCGCAGAGTGGTACTGGTGTCAGTGTCGAAGCCGTCGATCATGTCTTTCAGACTAATATGCTTGATATGCTTAAGCAGACCGGACGACCAGAGATGGTAGTTGGGTGGTACCATTCGCATCCTGGATTTGGATGTTGGCTATCTGGTGTGGACATTAATACCCAGCAGAGCTTTGAAGCTTTGAATCAACGGGCTGTAGCTGTAGTGGTGGATCCAATTCAGAGTGTGAAGGGGAAGGTAGTCATTGATGCATTCCGCCTTATCAACCCACAAACTATGATGCTTGGCCAAGAACCACGGCAGACCACATCCAATCTCGGGCATCTAAATAAGCCATCAATTCAAGCCTTGATCCATGGGTTAAATCGTCATTATTACTCCATAGCAATTAATTATCGGAAGAATGAACTCGAGGAGAAAATGTTGCTTAACCTTCACAAGAAGAAATGGACAGATGGGCTGACACTAAAGCGATTTGACACTCATTCAAAAACAAATGAGCAAACAGTTCAGGTAATGGCTTTTTATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

255

Amino Acids

28.5

Weight (kDa)

7.17

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	30 - 141	5.7e-35	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB	PF14464	41 - 131	1.1e-06	Prokaryotic homologs of the JAB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	88
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	2 cut(s)	38, 342
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	4 cut(s)	62, 65, 236, 490
AclWI	GGATC	3 cut(s)	440, 453, 580
AcoI	YGGCCR	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	247, 344
AfiI	CCNNNNNNNGG	3 cut(s)	242, 362, 552
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	410, 418, 578, 723
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	5 cut(s)	50, 149, 405, 413, 434
AluI	AGCT	5 cut(s)	50, 149, 405, 413, 434
Alw21I	GWGCWC	1 cut(s)	52
AlwI	GGATC	3 cut(s)	440, 453, 580
Ama87I	CYCGRG	2 cut(s)	551, 644
AoxI	GGCC	2 cut(s)	55, 520
ApeKI	GCWGC	1 cut(s)	19
AseI	ATTAAT	2 cut(s)	390, 624
Asp718I	GGTACC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	55
AvaI	CYCGRG	2 cut(s)	551, 644
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BalI	TGGCCA	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	2 cut(s)	38, 342
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	3 cut(s)	322, 577, 683
BceAI	ACGGC	2 cut(s)	251, 548
BciT130I	CCWGG	1 cut(s)	357
BfmI	CTRYAG	3 cut(s)	20, 429, 435
BfoI	RGCGCY	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	3 cut(s)	20, 65, 236
BlsI	GCNGC	3 cut(s)	21, 66, 237
Bme1390I	CCNGG	1 cut(s)	357
BmeT110I	CYCGRG	2 cut(s)	551, 644
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	40, 156, 344, 447
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	6 cut(s)	168, 222, 361, 472, 504, 565
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	114, 530, 589
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 177, 207, 641, 671
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 362, 552
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	114, 530, 589
BseGI	GGATG	4 cut(s)	202, 352, 371, 542
BseLI	CCNNNNNNNGG	3 cut(s)	242, 362, 552
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	4 cut(s)	60, 100, 113, 662
BseXI	GCAGC	1 cut(s)	6
BseYI	CCCAGC	3 cut(s)	149, 181, 396
BshFI	GGCC	2 cut(s)	57, 522
BshNI	GGYRCC	2 cut(s)	38, 342
BsiHKAI	GWGCWC	1 cut(s)	52
BsiHKCI	CYCGRG	2 cut(s)	551, 644
BsiSI	CCGG	3 cut(s)	36, 42, 315
BslI	CCNNNNNNNGG	3 cut(s)	242, 362, 552
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	57, 522
BsoBI	CYCGRG	2 cut(s)	551, 644
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	271, 445, 585
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	4 cut(s)	62, 65, 236, 490
BspANI	GGCC	2 cut(s)	57, 522
BspLI	GGNNCC	4 cut(s)	40, 156, 344, 447
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	440, 453, 580
BspQI	GCTCTTC	1 cut(s)	139
BspT107I	GGYRCC	2 cut(s)	38, 342
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	114, 530, 589
BssMI	GATC	3 cut(s)	271, 445, 585
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	114, 589
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	208, 742
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	305
BstDSI	CCRYGG	2 cut(s)	530, 589
BstF5I	GGATG	4 cut(s)	202, 352, 371, 542
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	3 cut(s)	274, 448, 588
BstMBI	GATC	3 cut(s)	271, 445, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 301
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	3 cut(s)	20, 429, 435
BstV1I	GCAGC	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	57, 522
BtgI	CCRYGG	2 cut(s)	530, 589
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	4 cut(s)	202, 352, 371, 542
BtsIMutI	CAGTG	2 cut(s)	204, 262
BveI	ACCTGC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	246, 343
CviAII	CATG	3 cut(s)	169, 275, 590
CviQI	GTAC	2 cut(s)	246, 343
DpnI	GATC	3 cut(s)	273, 447, 587
DpnII	GATC	3 cut(s)	271, 445, 585
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	479
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	114, 589
Eco24I	GRGCYC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	50
Eco88I	CYCGRG	2 cut(s)	551, 644
EcoICRI	GAGCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	114, 589
EcoT22I	ATGCAT	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	2 cut(s)	114, 589
FaeI	CATG	3 cut(s)	172, 278, 593
FatI	CATG	3 cut(s)	168, 274, 589
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	20, 65, 236
FokI	GGATG	4 cut(s)	209, 339, 378, 529
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	20, 65, 236
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	3 cut(s)	20, 65, 236
GsaI	CCCAGC	3 cut(s)	153, 185, 400
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	57, 522
HapII	CCGG	3 cut(s)	36, 42, 315
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	172, 278, 593
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	3 cut(s)	71, 86, 418
HpaII	CCGG	3 cut(s)	36, 42, 315
Hpy166II	GTNNAC	3 cut(s)	103, 220, 385
Hpy188I	TCNGA	4 cut(s)	94, 285, 456, 633
Hpy8I	GTNNAC	3 cut(s)	103, 220, 385
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	457, 463, 677
HpyCH4III	ACNGT	2 cut(s)	208, 742
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	22, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 301
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	172, 278, 593
HspAI	GCGC	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	271, 445, 585
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	47, 126
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	6 cut(s)	168, 222, 361, 472, 504, 565
MaeII	ACGT	1 cut(s)	222
MalI	GATC	3 cut(s)	273, 447, 587
MboI	GATC	3 cut(s)	271, 445, 585
MboII	GAAGA	3 cut(s)	156, 646, 688
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	4 cut(s)	450, 573, 621, 625
MluNI	TGGCCA	1 cut(s)	522
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	9, 38, 92, 100, 121, 134, 157, 640
Mox20I	TGGCCA	1 cut(s)	522
Mph1103I	ATGCAT	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	5 cut(s)	306, 390, 596, 624, 663
Msp20I	TGGCCA	1 cut(s)	522
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	3 cut(s)	36, 42, 315
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	47, 301
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	271, 445, 585
NlaIII	CATG	3 cut(s)	172, 278, 593
NlaIV	GGNNCC	4 cut(s)	40, 156, 344, 447
NsiI	ATGCAT	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	644
PciSI	GCTCTTC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 267
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	86, 418
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	21, 66, 237
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PshBI	ATTAAT	2 cut(s)	390, 624
PsiI	TTATAA	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	355
PspFI	CCCAGC	3 cut(s)	149, 181, 396
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	4 cut(s)	40, 156, 344, 447
PspPI	GGNCC	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	644
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	2 cut(s)	247, 344
RsaNI	GTAC	2 cut(s)	246, 343
SacI	GAGCTC	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	5 cut(s)	306, 390, 596, 624, 663
SatI	GCNGC	3 cut(s)	20, 65, 236
Sau3AI	GATC	3 cut(s)	271, 445, 585
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	6 cut(s)	168, 222, 361, 472, 504, 565
SfcI	CTRYAG	3 cut(s)	20, 429, 435
Sfr274I	CTCGAG	1 cut(s)	644
SgrAI	CRCCGGYG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	644
SmlI	CTYRAG	3 cut(s)	134, 305, 644
SmoI	CTYRAG	3 cut(s)	134, 305, 644
Sse9I	AATT	4 cut(s)	450, 573, 621, 625
SsiI	CCGC	4 cut(s)	62, 65, 236, 490
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	2 cut(s)	114, 589
TaaI	ACNGT	2 cut(s)	208, 742
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	4 cut(s)	84, 261, 270, 645
TasI	AATT	4 cut(s)	450, 573, 621, 625
TauI	GCSGC	2 cut(s)	67, 238
TfiI	GAWTC	2 cut(s)	86, 418
Tru1I	TTAA	5 cut(s)	306, 390, 596, 624, 663
Tru9I	TTAA	5 cut(s)	306, 390, 596, 624, 663
TscAI	CASTG	2 cut(s)	211, 262
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	213, 654
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	211, 262
Vha464I	CTTAAG	1 cut(s)	305
VspI	ATTAAT	2 cut(s)	390, 624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	102
ZraI	GACGTC	1 cut(s)	223
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.