Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

7287902 .. 7293348

Gene Structure 5447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGAGGCTGCAGAGAATGTTCGCCGGTGCCGGAGGACCTTTGGGCCACCCTCCGCCCGATTCCCCCACCCTGGATTCCTCCGAGCAGGTCTACATCTCCTCCTTGGCCCTCCTCAAGATGCTCAAGCACGGAAGAGCTGGGGTTCCTATGGAGGTCATGGGATTGATGCTGGGAGAGTTTGTGGATGATTACACTGTTAAAGTTGTGGATGTGTTTGCCATGCCGCAGAGTGGAACTGGTGTCAGCGTCGAAGCCGTGGATCATGTCTTCCAGACTAATATGCTTGATATGCTCAAGCAAACTGGCCGGCCAGAGATGGTTGTTGGGTGGTACCATTCACATCCTGGATTTGGATGTTGGCTATCTGGTGTAGACATTAATACCCAGCAGAGCTTTGAAGCTTTGAATCAACGGGCTGTAGCTGTAGTGGTGGATCCAATTCAGAGCGTGAAAGGGAAGGTAGTCATCGATGCATTCCGCCTTATCAACCCACAAACTATGATGCTTGGCCAAGAACCACGGCAGACCACATCCAATCTTGGGCATCTAAATAAGCCATCAATTCAGGCCTTGATCCATGGATTAAATCGTCATTACTACTCCATAGCAATTAATTACAGGAAGAATGAACTCGAGGAGAAAATGTTGCTTAACCTTCACAAGAAGAAATGGACAGATGGGCTGACACTTAAGCGGTTTGACACTCACTCAAAAACAAATGAGCAAACAGTTCAGGAGATGTTAAATCTAGCTGTTAAATACAACAAGGCAGTGCAGGAGGAGGATGAGCTGCCACCAGAGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTCGAGGAGCATGTCTCCAACTTGATGTCCTCAAACATTGTCCAGACCTTGGGCACGATGCTTGATACTGTGGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

310

Amino Acids

34.52

Weight (kDa)

6.31

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	27 - 138	4.7e-35	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB	PF14464	38 - 128	5.4e-06	Prokaryotic homologs of the JAB domain
RPN11_C	PF23594	228 - 307	1e-34	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	851
Acc36I	ACCTGC	1 cut(s)	79
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	2 cut(s)	29, 333
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccI	GTMKAC	2 cut(s)	93, 375
AciI	CCGC	4 cut(s)	56, 227, 481, 697
AclWI	GGATC	4 cut(s)	270, 431, 444, 571
AcoI	YGGCCR	3 cut(s)	307, 311, 511
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	5 cut(s)	73, 233, 353, 543, 898
AflII	CTTAAG	1 cut(s)	692
AgsI	TTSAA	2 cut(s)	401, 409
AjnI	CCWGG	2 cut(s)	72, 346
AluBI	AGCT	7 cut(s)	140, 396, 404, 425, 755, 793, 808
AluI	AGCT	7 cut(s)	140, 396, 404, 425, 755, 793, 808
Alw26I	GTCTC	1 cut(s)	868
AlwI	GGATC	4 cut(s)	270, 431, 444, 571
Ama87I	CYCGRG	2 cut(s)	635, 851
AoxI	GGCC	6 cut(s)	46, 108, 307, 311, 511, 570
ApeKI	GCWGC	2 cut(s)	10, 793
AseI	ATTAAT	2 cut(s)	381, 615
Asp718I	GGTACC	1 cut(s)	333
AspS9I	GGNCC	3 cut(s)	38, 46, 109
AvaI	CYCGRG	2 cut(s)	635, 851
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	905
BaeI	ACNNNNGTAYC	1 cut(s)	906
BalI	TGGCCA	1 cut(s)	513
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	2 cut(s)	29, 333
BbsI	GAAGAC	2 cut(s)	262, 835
BbvI	GCAGC	1 cut(s)	780
BccI	CCATC	3 cut(s)	313, 568, 674
BceAI	ACGGC	2 cut(s)	242, 539
BciT130I	CCWGG	2 cut(s)	74, 348
BcoDI	GTCTC	1 cut(s)	868
BfaI	CTAG	1 cut(s)	752
BfmI	CTRYAG	3 cut(s)	11, 420, 426
BfrI	CTTAAG	1 cut(s)	692
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	11, 227, 794
BlsI	GCNGC	3 cut(s)	12, 228, 795
Bme1390I	CCNGG	2 cut(s)	74, 348
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	2 cut(s)	635, 851
BmgT120I	GGNCC	3 cut(s)	38, 46, 109
BmiI	GGNNCC	4 cut(s)	31, 147, 335, 438
BmrFI	CCNGG	2 cut(s)	74, 348
BmsI	GCATC	7 cut(s)	111, 159, 463, 495, 556, 826, 897
BpiI	GAAGAC	2 cut(s)	262, 835
BplI	GAGNNNNNCTC	2 cut(s)	848, 880
BpuEI	CTTGAG	3 cut(s)	101, 110, 281
Bsa29I	ATCGAT	1 cut(s)	471
BsaJI	CCNNGG	6 cut(s)	72, 105, 258, 521, 580, 897
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 168, 198, 632, 662
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 233, 353, 543, 898
Bse118I	RCCGGY	2 cut(s)	26, 309
Bse1I	ACTGG	2 cut(s)	244, 310
BseBI	CCWGG	2 cut(s)	74, 348
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	6 cut(s)	72, 105, 258, 521, 580, 897
BseGI	GGATG	6 cut(s)	193, 217, 343, 362, 533, 793
BseLI	CCNNNNNNNGG	5 cut(s)	73, 233, 353, 543, 898
BseNI	ACTGG	2 cut(s)	244, 310
BseRI	GAGGAG	5 cut(s)	91, 104, 653, 797, 869
BseSI	GKGCMC	1 cut(s)	905
BseXI	GCAGC	1 cut(s)	780
BseYI	CCCAGC	3 cut(s)	140, 172, 387
BsgI	GTGCAG	1 cut(s)	797
BshFI	GGCC	6 cut(s)	48, 110, 309, 313, 513, 572
BshNI	GGYRCC	2 cut(s)	29, 333
BshVI	ATCGAT	1 cut(s)	471
BsiHKCI	CYCGRG	2 cut(s)	635, 851
BsiSI	CCGG	3 cut(s)	27, 33, 310
BslI	CCNNNNNNNGG	5 cut(s)	73, 233, 353, 543, 898
BsmAI	GTCTC	1 cut(s)	868
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	6 cut(s)	48, 110, 309, 313, 513, 572
BsoBI	CYCGRG	2 cut(s)	635, 851
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	3 cut(s)	262, 436, 576
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	4 cut(s)	56, 227, 481, 697
BspANI	GGCC	6 cut(s)	48, 110, 309, 313, 513, 572
BspDI	ATCGAT	1 cut(s)	471
BspLI	GGNNCC	4 cut(s)	31, 147, 335, 438
BspMAI	CTGCAG	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	4 cut(s)	270, 431, 444, 571
BspQI	GCTCTTC	1 cut(s)	130
BspT107I	GGYRCC	2 cut(s)	29, 333
BspTI	CTTAAG	1 cut(s)	692
BsrFI	RCCGGY	2 cut(s)	26, 309
BsrI	ACTGG	2 cut(s)	244, 310
BssAI	RCCGGY	2 cut(s)	26, 309
BssECI	CCNNGG	6 cut(s)	72, 105, 258, 521, 580, 897
BssMI	GATC	3 cut(s)	262, 436, 576
BssT1I	CCWWGG	3 cut(s)	105, 580, 897
Bst2UI	CCWGG	2 cut(s)	74, 348
Bst4CI	ACNGT	3 cut(s)	199, 733, 919
Bst6I	CTCTTC	1 cut(s)	130
BstAFI	CTTAAG	1 cut(s)	692
BstC8I	GCNNGC	2 cut(s)	311, 810
BstDSI	CCRYGG	3 cut(s)	258, 521, 580
BstF5I	GGATG	6 cut(s)	193, 217, 343, 362, 533, 793
BstKTI	GATC	3 cut(s)	265, 439, 579
BstMAI	GTCTC	1 cut(s)	868
BstMBI	GATC	3 cut(s)	262, 436, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	2 cut(s)	74, 348
BstNSI	RCATGY	1 cut(s)	863
BstSCI	CCNGG	2 cut(s)	72, 346
BstSFI	CTRYAG	3 cut(s)	11, 420, 426
BstSLI	GKGCMC	1 cut(s)	905
BstV1I	GCAGC	1 cut(s)	780
BstV2I	GAAGAC	2 cut(s)	262, 835
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	471
BsuRI	GGCC	6 cut(s)	48, 110, 309, 313, 513, 572
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	3 cut(s)	258, 521, 580
BtsCI	GGATG	6 cut(s)	193, 217, 343, 362, 533, 793
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	2 cut(s)	195, 780
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	311, 810
Cfr10I	RCCGGY	2 cut(s)	26, 309
Cfr13I	GGNCC	3 cut(s)	38, 46, 109
ClaI	ATCGAT	1 cut(s)	471
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	5 cut(s)	160, 223, 266, 581, 860
CviQI	GTAC	1 cut(s)	334
DpnI	GATC	3 cut(s)	264, 438, 578
DpnII	GATC	3 cut(s)	262, 436, 576
EaeI	YGGCCR	3 cut(s)	307, 311, 511
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	2 cut(s)	45, 470
Eco130I	CCWWGG	3 cut(s)	105, 580, 897
Eco147I	AGGCCT	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	38
Eco88I	CYCGRG	2 cut(s)	635, 851
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	72, 346
EcoT14I	CCWWGG	3 cut(s)	105, 580, 897
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	3 cut(s)	105, 580, 897
FaeI	CATG	5 cut(s)	163, 226, 269, 584, 863
FatI	CATG	5 cut(s)	159, 222, 265, 580, 859
FblI	GTMKAC	2 cut(s)	93, 375
Fnu4HI	GCNGC	3 cut(s)	11, 227, 794
FokI	GGATG	6 cut(s)	200, 224, 330, 369, 520, 800
FseI	GGCCGGCC	1 cut(s)	313
Fsp4HI	GCNGC	3 cut(s)	11, 227, 794
FspBI	CTAG	1 cut(s)	752
GluI	GCNGC	3 cut(s)	11, 227, 794
GsaI	CCCAGC	3 cut(s)	144, 176, 391
HaeIII	GGCC	6 cut(s)	48, 110, 309, 313, 513, 572
HapII	CCGG	3 cut(s)	27, 33, 310
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	5 cut(s)	163, 226, 269, 584, 863
HindIII	AAGCTT	2 cut(s)	402, 806
HinfI	GANTC	3 cut(s)	62, 77, 409
HpaII	CCGG	3 cut(s)	27, 33, 310
Hpy166II	GTNNAC	2 cut(s)	94, 376
Hpy188I	TCNGA	2 cut(s)	85, 447
Hpy188III	TCNNGA	4 cut(s)	118, 274, 737, 892
Hpy8I	GTNNAC	2 cut(s)	94, 376
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	454, 668
HpyCH4III	ACNGT	3 cut(s)	199, 733, 919
HpyCH4V	TGCA	5 cut(s)	13, 476, 778, 812, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
Hsp92II	CATG	5 cut(s)	163, 226, 269, 584, 863
KpnI	GGTACC	1 cut(s)	337
KroI	GCCGGC	1 cut(s)	309
KroNI	GCCGGC	1 cut(s)	311
Kzo9I	GATC	3 cut(s)	262, 436, 576
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	856
Lsp1109I	GCAGC	1 cut(s)	780
LweI	GCATC	7 cut(s)	111, 159, 463, 495, 556, 826, 897
MaeI	CTAG	1 cut(s)	752
MalI	GATC	3 cut(s)	264, 438, 578
MboI	GATC	3 cut(s)	262, 436, 576
MboII	GAAGA	5 cut(s)	147, 262, 637, 679, 840
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	905
MlsI	TGGCCA	1 cut(s)	513
MluCI	AATT	5 cut(s)	441, 564, 612, 616, 813
MluNI	TGGCCA	1 cut(s)	513
MmeI	TCCRAC	1 cut(s)	891
Mox20I	TGGCCA	1 cut(s)	513
Mph1103I	ATGCAT	1 cut(s)	478
MroNI	GCCGGC	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	513
MseI	TTAA	8 cut(s)	201, 381, 587, 615, 654, 693, 746, 759
Msp20I	TGGCCA	1 cut(s)	513
MspCI	CTTAAG	1 cut(s)	692
MspI	CCGG	3 cut(s)	27, 33, 310
MspR9I	CCNGG	2 cut(s)	74, 348
MunI	CAATTG	1 cut(s)	813
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	2 cut(s)	74, 348
MwoI	GCNNNNNNNGC	1 cut(s)	292
NaeI	GCCGGC	1 cut(s)	311
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	3 cut(s)	262, 436, 576
NgoMIV	GCCGGC	1 cut(s)	309
NlaIII	CATG	5 cut(s)	163, 226, 269, 584, 863
NlaIV	GGNNCC	4 cut(s)	31, 147, 335, 438
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	863
PaeR7I	CTCGAG	2 cut(s)	635, 851
PceI	AGGCCT	1 cut(s)	572
PciSI	GCTCTTC	1 cut(s)	130
PctI	GAATGC	1 cut(s)	476
PdiI	GCCGGC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	62, 77, 409
PflMI	CCANNNNNTGG	1 cut(s)	898
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	3 cut(s)	12, 228, 795
PpuMI	RGGWCCY	1 cut(s)	38
PshBI	ATTAAT	2 cut(s)	381, 615
Psp5II	RGGWCCY	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	72, 346
PspFI	CCCAGC	3 cut(s)	140, 172, 387
PspGI	CCWGG	2 cut(s)	72, 346
PspN4I	GGNNCC	4 cut(s)	31, 147, 335, 438
PspPI	GGNCC	3 cut(s)	38, 46, 109
PspPPI	RGGWCCY	1 cut(s)	38
PspXI	VCTCGAGB	2 cut(s)	635, 851
PstI	CTGCAG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	436
RigI	GGCCGGCC	1 cut(s)	313
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	130
SaqAI	TTAA	8 cut(s)	201, 381, 587, 615, 654, 693, 746, 759
SatI	GCNGC	3 cut(s)	11, 227, 794
Sau3AI	GATC	3 cut(s)	262, 436, 576
Sau96I	GGNCC	3 cut(s)	38, 46, 109
ScrFI	CCNGG	2 cut(s)	74, 348
SduI	GDGCHC	1 cut(s)	905
SfaNI	GCATC	7 cut(s)	111, 159, 463, 495, 556, 826, 897
SfcI	CTRYAG	3 cut(s)	11, 420, 426
Sfr274I	CTCGAG	2 cut(s)	635, 851
SgrAI	CRCCGGYG	1 cut(s)	26
SinI	GGWCC	1 cut(s)	38
SlaI	CTCGAG	2 cut(s)	635, 851
SmlI	CTYRAG	6 cut(s)	116, 125, 296, 635, 692, 851
SmoI	CTYRAG	6 cut(s)	116, 125, 296, 635, 692, 851
Sse9I	AATT	5 cut(s)	441, 564, 612, 616, 813
SseBI	AGGCCT	1 cut(s)	572
SsiI	CCGC	4 cut(s)	56, 227, 481, 697
SspMI	CTAG	1 cut(s)	752
StuI	AGGCCT	1 cut(s)	572
StyD4I	CCNGG	2 cut(s)	72, 346
StyI	CCWWGG	3 cut(s)	105, 580, 897
TaaI	ACNGT	3 cut(s)	199, 733, 919
TaqI	TCGA	4 cut(s)	252, 471, 636, 852
TasI	AATT	5 cut(s)	441, 564, 612, 616, 813
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	3 cut(s)	62, 77, 409
Tru1I	TTAA	8 cut(s)	201, 381, 587, 615, 654, 693, 746, 759
Tru9I	TTAA	8 cut(s)	201, 381, 587, 615, 654, 693, 746, 759
TscAI	CASTG	2 cut(s)	202, 780
TseI	GCWGC	2 cut(s)	10, 793
TspDTI	ATGAA	1 cut(s)	645
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	202, 780
Van91I	CCANNNNNTGG	1 cut(s)	898
Vha464I	CTTAAG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	38
VspI	ATTAAT	2 cut(s)	381, 615
XceI	RCATGY	1 cut(s)	863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XhoI	CTCGAG	2 cut(s)	635, 851
XmiI	GTMKAC	2 cut(s)	93, 375
XspI	CTAG	1 cut(s)	752
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.