Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

23663895 .. 23667050

Gene Structure 3156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGAATGTTCTAGAGTTCAAGGCCCCCGTTTCGAAGACGAATCGGAGCAACTGCGAAAGAAGTGCGCTTCGTGTTTCCGAGAGTGGTACTGGTGTTAGTGTTGAAGCAGTGGATCATGTGTTCCAGACTAACATGATCGATATGCTTAAGCAGATTGGAAGACCAGAGATGGTTGTAGGGTGGTACCATTCGCATCCTAGATCTGGCTGTTGGCTATCTGGTGTAGACATTAATACACAGCAGAGCTTTGAAGCTTTGAATCAACATGTTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGAGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGATGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTGGGCCATCTTAATAAACCATCTATTCAAAGGACCGGGAAAGTGGGAATGCGAAACAAAGAAGACGGATGGGCTGGGTCTTCATCTGGACCTCTGAACGGGCCTATGTCAACGTCTCCAAGATGGGCGAGCTTACCGACAGATCGAGATGAATATGATCGAGTTATGGATCATACCATTTATGGCAATGGGACCATGATCGATCATACCATCAATATTCTTCATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

207

Amino Acids

23.06

Weight (kDa)

8.62

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	23 - 89	2.6e-17	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	4 cut(s)	123, 284, 297, 570
AfaI	GTAC	2 cut(s)	91, 188
AfiI	CCNNNNNNNGG	2 cut(s)	206, 491
AflII	CTTAAG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	5 cut(s)	22, 107, 254, 262, 422
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	3 cut(s)	249, 257, 525
AluI	AGCT	3 cut(s)	249, 257, 525
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	4 cut(s)	123, 284, 297, 570
AoxI	GGCC	3 cut(s)	24, 397, 494
AseI	ATTAAT	1 cut(s)	234
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	6 cut(s)	25, 397, 426, 482, 494, 585
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	35
AvaII	GGWCC	3 cut(s)	426, 482, 585
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BamHI	GGATCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	186
BbsI	GAAGAC	4 cut(s)	44, 169, 462, 465
BccI	CCATC	6 cut(s)	166, 408, 421, 456, 510, 611
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	513
BfaI	CTAG	2 cut(s)	14, 201
BfrI	CTTAAG	1 cut(s)	149
BglII	AGATCT	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	3 cut(s)	426, 482, 585
BmgT120I	GGNCC	6 cut(s)	25, 397, 426, 482, 494, 585
BmiI	GGNNCC	4 cut(s)	27, 188, 291, 586
BmrFI	CCNGG	1 cut(s)	430
BmsI	GCATC	3 cut(s)	205, 316, 348
BpiI	GAAGAC	4 cut(s)	44, 169, 462, 465
Bpu14I	TTCGAA	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	430
Bsa29I	ATCGAT	2 cut(s)	141, 594
BsaJI	CCNNGG	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 491
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	586
BseCI	ATCGAT	2 cut(s)	141, 594
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	3 cut(s)	196, 386, 467
BseLI	CCNNNNNNNGG	2 cut(s)	206, 491
BseMI	GCAATG	1 cut(s)	586
BseNI	ACTGG	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	467
BshFI	GGCC	3 cut(s)	26, 399, 496
BshNI	GGYRCC	1 cut(s)	186
BshVI	ATCGAT	2 cut(s)	141, 594
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	2 cut(s)	206, 491
BsmAI	GTCTC	1 cut(s)	513
BsmBI	CGTCTC	1 cut(s)	513
BsmFI	GGGAC	1 cut(s)	598
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	3 cut(s)	26, 399, 496
Bsp119I	TTCGAA	1 cut(s)	35
Bsp143I	GATC	9 cut(s)	115, 138, 203, 289, 535, 550, 562, 591, 595
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	3 cut(s)	26, 399, 496
BspDI	ATCGAT	2 cut(s)	141, 594
BspLI	GGNNCC	4 cut(s)	27, 188, 291, 586
BspPI	GGATC	4 cut(s)	123, 284, 297, 570
BspT104I	TTCGAA	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	9 cut(s)	115, 138, 203, 289, 535, 550, 562, 591, 595
Bst6I	CTCTTC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	523
BstF5I	GGATG	3 cut(s)	196, 386, 467
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	9 cut(s)	118, 141, 206, 292, 538, 553, 565, 594, 598
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	9 cut(s)	115, 138, 203, 289, 535, 550, 562, 591, 595
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	428
BstV2I	GAAGAC	4 cut(s)	44, 169, 462, 465
BstX2I	RGATCY	2 cut(s)	203, 289
BstYI	RGATCY	2 cut(s)	203, 289
Bsu15I	ATCGAT	2 cut(s)	141, 594
BsuRI	GGCC	3 cut(s)	26, 399, 496
BsuTUI	ATCGAT	2 cut(s)	141, 594
BtsCI	GGATG	3 cut(s)	196, 386, 467
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	523
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	6 cut(s)	25, 397, 426, 482, 494, 585
ClaI	ATCGAT	2 cut(s)	141, 594
Csp6I	GTAC	2 cut(s)	90, 187
CviAII	CATG	4 cut(s)	119, 136, 269, 589
CviJI	RGCY	9 cut(s)	26, 210, 217, 249, 257, 399, 467, 496, 525
CviKI_1	RGCY	9 cut(s)	26, 210, 217, 249, 257, 399, 467, 496, 525
CviQI	GTAC	2 cut(s)	90, 187
DpnI	GATC	9 cut(s)	117, 140, 205, 291, 537, 552, 564, 593, 597
DpnII	GATC	9 cut(s)	115, 138, 203, 289, 535, 550, 562, 591, 595
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	1 cut(s)	323
Eco47I	GGWCC	3 cut(s)	426, 482, 585
EcoO109I	RGGNCCY	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	513
FaeI	CATG	4 cut(s)	122, 139, 272, 592
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	4 cut(s)	118, 135, 268, 588
FblI	GTMKAC	1 cut(s)	228
FokI	GGATG	3 cut(s)	183, 373, 474
FspBI	CTAG	2 cut(s)	14, 201
GlaI	GCGC	1 cut(s)	69
GsaI	CCCAGC	1 cut(s)	471
HaeIII	GGCC	3 cut(s)	26, 399, 496
HapII	CCGG	1 cut(s)	429
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	4 cut(s)	122, 139, 272, 592
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	2 cut(s)	43, 262
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	229, 504
Hpy188I	TCNGA	4 cut(s)	48, 82, 300, 489
Hpy188III	TCNNGA	5 cut(s)	14, 127, 368, 480, 539
Hpy8I	GTNNAC	2 cut(s)	229, 504
HpyAV	CCTTC	2 cut(s)	307, 340
HpyCH4IV	ACGT	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	4 cut(s)	122, 139, 272, 592
HspAI	GCGC	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	9 cut(s)	115, 138, 203, 289, 535, 550, 562, 591, 595
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	9 cut(s)	78, 140, 180, 192, 207, 380, 442, 453, 465
LweI	GCATC	3 cut(s)	205, 316, 348
MaeI	CTAG	2 cut(s)	14, 201
MaeII	ACGT	1 cut(s)	506
MalI	GATC	9 cut(s)	117, 140, 205, 291, 537, 552, 564, 593, 597
MboI	GATC	9 cut(s)	115, 138, 203, 289, 535, 550, 562, 591, 595
MboII	GAAGA	6 cut(s)	49, 174, 319, 465, 467, 605
MflI	RGATCY	2 cut(s)	203, 289
MluCI	AATT	1 cut(s)	294
MnlI	CCTC	3 cut(s)	303, 384, 495
MseI	TTAA	3 cut(s)	150, 234, 405
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	9 cut(s)	115, 138, 203, 289, 535, 550, 562, 591, 595
NlaIII	CATG	4 cut(s)	122, 139, 272, 592
NlaIV	GGNNCC	4 cut(s)	27, 188, 291, 586
NmeAIII	GCCGAG	1 cut(s)	355
NspI	RCATGY	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	35
PciI	ACATGT	1 cut(s)	268
PctI	GAATGC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	43, 262
PscI	ACATGT	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	467
PspN4I	GGNNCC	4 cut(s)	27, 188, 291, 586
PspPI	GGNCC	6 cut(s)	25, 397, 426, 482, 494, 585
PsuI	RGATCY	2 cut(s)	203, 289
RsaI	GTAC	2 cut(s)	91, 188
RsaNI	GTAC	2 cut(s)	90, 187
SaqAI	TTAA	3 cut(s)	150, 234, 405
Sau3AI	GATC	9 cut(s)	115, 138, 203, 289, 535, 550, 562, 591, 595
Sau96I	GGNCC	6 cut(s)	25, 397, 426, 482, 494, 585
ScrFI	CCNGG	1 cut(s)	430
SetI	ASST	7 cut(s)	251, 259, 318, 376, 487, 509, 527
SfaNI	GCATC	3 cut(s)	205, 316, 348
SfuI	TTCGAA	1 cut(s)	35
SinI	GGWCC	3 cut(s)	426, 482, 585
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	1 cut(s)	334
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	2 cut(s)	14, 201
StyD4I	CCNGG	1 cut(s)	428
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	5 cut(s)	35, 141, 538, 553, 594
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	43, 262
Tru1I	TTAA	3 cut(s)	150, 234, 405
Tru9I	TTAA	3 cut(s)	150, 234, 405
TscAI	CASTG	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	465, 558, 605
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	117
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	426, 482, 585
VspI	ATTAAT	1 cut(s)	234
XbaI	TCTAGA	1 cut(s)	13
XceI	RCATGY	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	2 cut(s)	14, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.