Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

25734885 .. 25736116

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34751.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTCGATATGCTCAAGCAGACCGGAAGACCTGAGATGGTTGTAGGGTGGTACCATTCGCATCCTGGATTCGGCTGTTGGCTATCTGGTGTGGACATTAATACGCAGCAGAGCTTCGAAGCTTTGAATCAACGTGCTGTGGCTGTGGTGGTGGATCCAATTCAGAATGTGAAGGGGAAGGTGGTCATTGATGCCTTCCACCTTATCAACCCACAGACTATGATGCTTGGTCAAGAACCTTGGCGGACCACATCCAATCTTGGCCATCTTAATAAACCATCTATTCAAGCTCTGATCCATGGTTTAAACCGGCATTATTACTCTATAGCAATCAATTACAGGAAGAATGAACTTGAGGAGAAGATGTTGCTTAACCTTCACAAGAAGAAATGGACTGATGGGTGCTACTCAATAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

140

Amino Acids

15.93

Weight (kDa)

8.93

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	1 - 44	8.1e-14	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	3 cut(s)	149, 162, 289
AcoI	YGGCCR	1 cut(s)	262
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	127, 287
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	3 cut(s)	114, 122, 290
AluI	AGCT	3 cut(s)	114, 122, 290
AlwI	GGATC	3 cut(s)	149, 162, 289
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	106
AseI	ATTAAT	1 cut(s)	99
Asp718I	GGTACC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	246
AsuII	TTCGAA	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	4 cut(s)	31, 273, 286, 392
BciT130I	CCWGG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	324
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	53, 156
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	3 cut(s)	70, 181, 213
BpiI	GAAGAC	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	239, 298
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	239, 298
BseGI	GGATG	2 cut(s)	61, 251
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	264
BshNI	GGYRCC	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	24, 310
BslI	CCNNNNNNNGG	1 cut(s)	71
BsnI	GGCC	1 cut(s)	264
Bsp119I	TTCGAA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	154, 294
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	53, 156
BspPI	GGATC	3 cut(s)	149, 162, 289
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	309
BssAI	RCCGGY	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	239, 298
BssMI	GATC	2 cut(s)	154, 294
BssT1I	CCWWGG	2 cut(s)	239, 298
Bst2UI	CCWGG	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	61, 251
BstKTI	GATC	2 cut(s)	157, 297
BstMBI	GATC	2 cut(s)	154, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	61, 251
Cfr10I	RCCGGY	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	7 cut(s)	75, 82, 114, 122, 143, 264, 290
CviKI_1	RGCY	7 cut(s)	75, 82, 114, 122, 143, 264, 290
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	2 cut(s)	156, 296
DpnII	GATC	2 cut(s)	154, 294
DraI	TTTAAA	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	262
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	239, 298
Eco47I	GGWCC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	239, 298
ErhI	CCWWGG	2 cut(s)	239, 298
FaeI	CATG	1 cut(s)	302
FaiI	YATR	5 cut(s)	11, 221, 300, 326, 418
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	107
FokI	GGATG	2 cut(s)	48, 238
Fsp4HI	GCNGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	2 cut(s)	24, 310
Hin1II	CATG	1 cut(s)	302
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	2 cut(s)	69, 127
HpaII	CCGG	2 cut(s)	24, 310
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	165, 294
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	4 cut(s)	166, 172, 205, 386
HpyCH4IV	ACGT	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	1 cut(s)	302
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	154, 294
LpnPI	CCDG	7 cut(s)	37, 45, 51, 72, 78, 323, 325
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	3 cut(s)	70, 181, 213
MaeII	ACGT	1 cut(s)	133
MalI	GATC	2 cut(s)	156, 296
MboI	GATC	2 cut(s)	154, 294
MboII	GAAGA	4 cut(s)	39, 355, 373, 397
MflI	RGATCY	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	2 cut(s)	159, 334
MluNI	TGGCCA	1 cut(s)	264
MnlI	CCTC	1 cut(s)	349
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	4 cut(s)	99, 270, 305, 372
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	2 cut(s)	24, 310
MspR9I	CCNGG	1 cut(s)	66
MssI	GTTTAAAC	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	2 cut(s)	154, 294
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	2 cut(s)	53, 156
NspV	TTCGAA	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	69, 127
PfoI	TCCNGGA	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	108
PmeI	GTTTAAAC	1 cut(s)	306
PshBI	ATTAAT	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	53, 156
PspPI	GGNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	4 cut(s)	99, 270, 305, 372
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	154, 294
Sau96I	GGNCC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	9 cut(s)	34, 116, 124, 136, 183, 204, 241, 292, 378
SfaNI	GCATC	3 cut(s)	70, 181, 213
SfcI	CTRYAG	1 cut(s)	324
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	14, 353
SmoI	CTYRAG	2 cut(s)	14, 353
Sse9I	AATT	2 cut(s)	159, 334
SsiI	CCGC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	2 cut(s)	239, 298
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	6, 117
TasI	AATT	2 cut(s)	159, 334
TfiI	GAWTC	2 cut(s)	69, 127
Tru1I	TTAA	4 cut(s)	99, 270, 305, 372
Tru9I	TTAA	4 cut(s)	99, 270, 305, 372
TseI	GCWGC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	246
VspI	ATTAAT	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.