Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

69022542 .. 69036091

Gene Structure 13550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG484400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAACTTGTTCGAGGAGAAGATGTTGCTTAGTCTTCATAAGAAGAATTGGGCAGATGGGCTAACACTTAAGCATTTTGATACTCATTCAAAGACAAATGAGCAAACTGTTAAGGAAATGTTAACCCTAGCTGTGAAGTACAACGAGGCGGTGCATGAGGAGGATGGGCTGACATCAGAGAAGCTTGCCATTGCAAATGTGGGAAGACCAGACGCCAAGAAGCGGCTCGAAGAGCGTGTCTCGAACTTGATGTCCTCGAACATTGTCCAAGAATTGCAGAAAGGGAGCCATCTAAAGCAAACAAGTTCAACAGAATCTGATAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

109

Amino Acids

12.35

Weight (kDa)

6.51

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN11_C	PF23594	20 - 93	2.8e-26	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 223
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	222
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	90, 309
AloI	GAACNNNNNNTCC	2 cut(s)	236, 268
AluBI	AGCT	3 cut(s)	131, 184, 326
AluI	AGCT	3 cut(s)	131, 184, 326
Alw26I	GTCTC	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	317
ArsI	GACNNNNNNTTYG	4 cut(s)	222, 236, 254, 268
Asp700I	GAANNNNTTC	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	26, 211
BccI	CCATC	3 cut(s)	50, 158, 297
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	68
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	287
BpiI	GAAGAC	2 cut(s)	26, 211
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BsaHI	GRCGYC	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	189
BseRI	GAGGAG	2 cut(s)	29, 173
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	149, 223
BspLI	GGNNCC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstV2I	GAAGAC	2 cut(s)	26, 211
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	317
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	7 cut(s)	61, 131, 169, 184, 226, 288, 326
CviKI_1	RGCY	7 cut(s)	61, 131, 169, 184, 226, 288, 326
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
FaeI	CATG	1 cut(s)	158
FaiI	YATR	2 cut(s)	39, 156
FatI	CATG	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	224
HgaI	GACGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	2 cut(s)	182, 324
HinfI	GANTC	1 cut(s)	314
HpaI	GTTAAC	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	178, 319
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	1 cut(s)	123
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	154, 194, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	158
KspAI	GTTAAC	1 cut(s)	123
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	285
LpnPI	CCDG	1 cut(s)	222
MaeI	CTAG	1 cut(s)	128
MboII	GAAGA	5 cut(s)	26, 31, 55, 216, 242
MluCI	AATT	2 cut(s)	46, 272
MnlI	CCTC	5 cut(s)	7, 139, 151, 154, 265
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	69, 111, 122
MspCI	CTTAAG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	69, 111, 122
SatI	GCNGC	1 cut(s)	224
SetI	ASST	3 cut(s)	133, 186, 328
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	46, 272
SsiI	CCGC	2 cut(s)	149, 223
SspMI	CTAG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	4 cut(s)	12, 228, 242, 257
TasI	AATT	2 cut(s)	46, 272
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	3 cut(s)	69, 111, 122
Tru9I	TTAA	3 cut(s)	69, 111, 122
TspDTI	ATGAA	2 cut(s)	17, 26
Vha464I	CTTAAG	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.