Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

63648093 .. 63679480

Gene Structure 31388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG408300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTGGATGTTCTAGAGTTCAAGGCCCCCGTTTCGGAGACGAATCAGAGCAATTGCGAAAGAAGTGCGTTTCGTGTTTCCGAGAGTGGTACTGGTGTTAGTGTTGAAGCAGTGGATCATGTGTTCCAGACTAACATGCTCGATATGCTTAAGCAGATTAGAAGACCGGAGATGGTTGTAGGGTGGTACCATTCGCATCCTAGATTTGGCTGTTGGCTATCTGGTGTAGACATTAATACACAGCAGAGCTTTGAAGCTTTGAATCAACATGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGAGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGATGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTGGGCCATCTTAATAAACCATCTATTCAAAGTGGTACTGGTGTTAGTGTTGAAGCAGTGGATCATGTGTTCCAGACTAACATGCTCGATATGCTTAAGCAGATTAGAAGACCGGAGATGGTTGTAGGGTGGTACCATTCGCATCCTAGATTTGGCTGTTGGCTATCTGGTGTAGACATTAATACACAGCAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

196

Amino Acids

22.12

Weight (kDa)

6.43

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	23 - 89	8.9e-18	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
JAB	PF01398	141 - 195	3.5e-15	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	186, 525
AccB1I	GGYRCC	2 cut(s)	186, 525
AccI	GTMKAC	2 cut(s)	228, 567
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	4 cut(s)	123, 284, 297, 462
AfaI	GTAC	4 cut(s)	91, 188, 430, 527
AfiI	CCNNNNNNNGG	3 cut(s)	34, 206, 545
AflII	CTTAAG	2 cut(s)	149, 488
AgsI	TTSAA	6 cut(s)	22, 107, 254, 262, 422, 446
AloI	GAACNNNNNNTCC	4 cut(s)	107, 139, 446, 478
AluBI	AGCT	3 cut(s)	249, 257, 586
AluI	AGCT	3 cut(s)	249, 257, 586
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	4 cut(s)	123, 284, 297, 462
AoxI	GGCC	2 cut(s)	24, 397
ApeKI	GCWGC	1 cut(s)	583
AseI	ATTAAT	2 cut(s)	234, 573
Asp718I	GGTACC	2 cut(s)	186, 525
AspS9I	GGNCC	2 cut(s)	25, 397
BaeI	ACNNNNGTAYC	4 cut(s)	81, 114, 420, 453
BamHI	GGATCC	1 cut(s)	289
BanI	GGYRCC	2 cut(s)	186, 525
BbsI	GAAGAC	2 cut(s)	169, 508
BccI	CCATC	4 cut(s)	166, 408, 421, 505
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	3 cut(s)	14, 201, 540
BfrI	CTTAAG	2 cut(s)	149, 488
BisI	GCNGC	1 cut(s)	584
BlsI	GCNGC	1 cut(s)	585
BmgT120I	GGNCC	2 cut(s)	25, 397
BmiI	GGNNCC	4 cut(s)	27, 188, 291, 527
BmsI	GCATC	4 cut(s)	205, 316, 348, 544
BpiI	GAAGAC	2 cut(s)	169, 508
BsaJI	CCNNGG	1 cut(s)	374
BsaWI	WCCGGW	2 cut(s)	166, 505
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 206, 545
Bse1I	ACTGG	2 cut(s)	97, 436
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	4 cut(s)	13, 196, 386, 535
BseLI	CCNNNNNNNGG	3 cut(s)	34, 206, 545
BseNI	ACTGG	2 cut(s)	97, 436
BshFI	GGCC	2 cut(s)	26, 399
BshNI	GGYRCC	2 cut(s)	186, 525
BsiSI	CCGG	2 cut(s)	167, 506
BslI	CCNNNNNNNGG	3 cut(s)	34, 206, 545
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	26, 399
Bsp143I	GATC	3 cut(s)	115, 289, 454
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	2 cut(s)	26, 399
BspLI	GGNNCC	4 cut(s)	27, 188, 291, 527
BspPI	GGATC	4 cut(s)	123, 284, 297, 462
BspT107I	GGYRCC	2 cut(s)	186, 525
BspTI	CTTAAG	2 cut(s)	149, 488
BsrI	ACTGG	2 cut(s)	97, 436
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	3 cut(s)	115, 289, 454
Bst6I	CTCTTC	1 cut(s)	302
BstAFI	CTTAAG	2 cut(s)	149, 488
BstF5I	GGATG	4 cut(s)	13, 196, 386, 535
BstKTI	GATC	3 cut(s)	118, 292, 457
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	115, 289, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 484
BstNSI	RCATGY	3 cut(s)	139, 272, 478
BstV2I	GAAGAC	2 cut(s)	169, 508
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	26, 399
BtsCI	GGATG	4 cut(s)	13, 196, 386, 535
BtsI	GCAGTG	2 cut(s)	117, 456
BtsIMutI	CAGTG	2 cut(s)	117, 456
Cfr13I	GGNCC	2 cut(s)	25, 397
Csp6I	GTAC	4 cut(s)	90, 187, 429, 526
CviAII	CATG	5 cut(s)	119, 136, 269, 458, 475
CviJI	RGCY	9 cut(s)	26, 210, 217, 249, 257, 399, 549, 556, 586
CviKI_1	RGCY	9 cut(s)	26, 210, 217, 249, 257, 399, 549, 556, 586
CviQI	GTAC	4 cut(s)	90, 187, 429, 526
DpnI	GATC	3 cut(s)	117, 291, 456
DpnII	GATC	3 cut(s)	115, 289, 454
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	5 cut(s)	122, 139, 272, 461, 478
FaiI	YATR	8 cut(s)	120, 137, 146, 270, 356, 459, 476, 485
FatI	CATG	5 cut(s)	118, 135, 268, 457, 474
FblI	GTMKAC	2 cut(s)	228, 567
Fnu4HI	GCNGC	1 cut(s)	584
FokI	GGATG	4 cut(s)	20, 183, 373, 522
Fsp4HI	GCNGC	1 cut(s)	584
FspBI	CTAG	3 cut(s)	14, 201, 540
GluI	GCNGC	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	26, 399
HapII	CCGG	2 cut(s)	167, 506
Hin1II	CATG	5 cut(s)	122, 139, 272, 461, 478
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	2 cut(s)	43, 262
HpaII	CCGG	2 cut(s)	167, 506
Hpy166II	GTNNAC	2 cut(s)	229, 568
Hpy188I	TCNGA	4 cut(s)	37, 48, 82, 300
Hpy188III	TCNNGA	4 cut(s)	14, 127, 368, 466
Hpy8I	GTNNAC	2 cut(s)	229, 568
HpyAV	CCTTC	2 cut(s)	307, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 484
Hsp92II	CATG	5 cut(s)	122, 139, 272, 461, 478
KpnI	GGTACC	2 cut(s)	190, 529
Kzo9I	GATC	3 cut(s)	115, 289, 454
LpnPI	CCDG	9 cut(s)	78, 140, 180, 207, 380, 417, 479, 519, 546
LweI	GCATC	4 cut(s)	205, 316, 348, 544
MaeI	CTAG	3 cut(s)	14, 201, 540
MalI	GATC	3 cut(s)	117, 291, 456
MboI	GATC	3 cut(s)	115, 289, 454
MboII	GAAGA	3 cut(s)	174, 319, 513
MfeI	CAATTG	1 cut(s)	52
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	2 cut(s)	52, 294
MnlI	CCTC	2 cut(s)	303, 384
MseI	TTAA	5 cut(s)	150, 234, 405, 489, 573
MspCI	CTTAAG	2 cut(s)	149, 488
MspI	CCGG	2 cut(s)	167, 506
MunI	CAATTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	145, 484
NdeII	GATC	3 cut(s)	115, 289, 454
NlaIII	CATG	5 cut(s)	122, 139, 272, 461, 478
NlaIV	GGNNCC	4 cut(s)	27, 188, 291, 527
NmeAIII	GCCGAG	1 cut(s)	355
NspI	RCATGY	3 cut(s)	139, 272, 478
PfeI	GAWTC	2 cut(s)	43, 262
PkrI	GCNGC	1 cut(s)	585
PshBI	ATTAAT	2 cut(s)	234, 573
PspN4I	GGNNCC	4 cut(s)	27, 188, 291, 527
PspPI	GGNCC	2 cut(s)	25, 397
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	4 cut(s)	91, 188, 430, 527
RsaNI	GTAC	4 cut(s)	90, 187, 429, 526
SaqAI	TTAA	5 cut(s)	150, 234, 405, 489, 573
SatI	GCNGC	1 cut(s)	584
Sau3AI	GATC	3 cut(s)	115, 289, 454
Sau96I	GGNCC	2 cut(s)	25, 397
SetI	ASST	5 cut(s)	251, 259, 318, 376, 588
SfaNI	GCATC	4 cut(s)	205, 316, 348, 544
SmlI	CTYRAG	2 cut(s)	149, 488
SmoI	CTYRAG	2 cut(s)	149, 488
Sse9I	AATT	2 cut(s)	52, 294
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	3 cut(s)	14, 201, 540
TaqI	TCGA	2 cut(s)	141, 480
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	2 cut(s)	52, 294
TfiI	GAWTC	2 cut(s)	43, 262
Tru1I	TTAA	5 cut(s)	150, 234, 405, 489, 573
Tru9I	TTAA	5 cut(s)	150, 234, 405, 489, 573
TscAI	CASTG	2 cut(s)	117, 456
TseI	GCWGC	1 cut(s)	583
TspRI	CASTG	2 cut(s)	117, 456
Vha464I	CTTAAG	2 cut(s)	149, 488
VspI	ATTAAT	2 cut(s)	234, 573
XbaI	TCTAGA	1 cut(s)	13
XceI	RCATGY	3 cut(s)	139, 272, 478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmiI	GTMKAC	2 cut(s)	228, 567
XspI	CTAG	3 cut(s)	14, 201, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.