Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

25736643 .. 25737999

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34752.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTCAGGGACGGAGAAACTACAGAGGATGTTCCCCGGCGCCGGAGGAGCTCTGGGTCACCCACCGCCGGATTCGCCCACTCTCGATTCAACAGAACAGGTTTACATCTCCTCGCTCGCGCTGTTGAAGATGCTAAAGCACGAATACTTCTGGGCTTTAGCGAGACACAACCGAATCGACGAGCAAGCAACCCGATTCAACCTTATCCATTCTGCTTCATCCATATCTTCAGGCATATCCTCTAAAGTCATATCCAAGTCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

89

Amino Acids

9.6

Weight (kDa)

8.93

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccII	CGCG	1 cut(s)	119
AciI	CCGC	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	41, 67
AgsI	TTSAA	3 cut(s)	90, 127, 199
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	157
AspLEI	GCGC	2 cut(s)	41, 121
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 67
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	33, 218
BseLI	CCNNNNNNNGG	2 cut(s)	41, 67
BseRI	GAGGAG	2 cut(s)	60, 100
Bsh1236I	CGCG	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	3 cut(s)	36, 42, 68
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	41, 67
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	117, 186
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	33, 218
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 121
BstMAI	GTCTC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 73
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	33, 218
Cac8I	GCNNGC	2 cut(s)	117, 186
CfoI	GCGC	2 cut(s)	41, 121
CviJI	RGCY	2 cut(s)	50, 155
CviKI_1	RGCY	2 cut(s)	50, 155
DinI	GGCGCC	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	52
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaiI	YATR	3 cut(s)	224, 236, 251
FaqI	GGGAC	1 cut(s)	22
FokI	GGATG	2 cut(s)	40, 205
FriOI	GRGCYC	1 cut(s)	52
GlaI	GCGC	2 cut(s)	40, 120
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	3 cut(s)	36, 42, 68
HhaI	GCGC	2 cut(s)	41, 121
Hin1I	GRCGYC	1 cut(s)	39
Hin6I	GCGC	2 cut(s)	39, 119
HinP1I	GCGC	2 cut(s)	39, 119
HinfI	GANTC	4 cut(s)	71, 86, 174, 195
HpaII	CCGG	3 cut(s)	36, 42, 68
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 73
Hsp92I	GRCGYC	1 cut(s)	39
HspAI	GCGC	2 cut(s)	39, 119
KasI	GGCGCC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	7 cut(s)	38, 49, 55, 81, 83, 136, 216
LweI	GCATC	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	56
MboII	GAAGA	2 cut(s)	139, 219
MhlI	GDGCHC	1 cut(s)	52
Mly113I	GGCGCC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	18, 38, 121, 250
MspI	CCGG	3 cut(s)	36, 42, 68
MspR9I	CCNGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	47, 73
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	56
PfeI	GAWTC	4 cut(s)	71, 86, 174, 195
PluTI	GGCGCC	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	52
PspEI	GGTNACC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	3 cut(s)	52, 102, 204
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	20
SfoI	GGCGCC	1 cut(s)	40
SsiI	CCGC	1 cut(s)	65
SspDI	GGCGCC	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	34
TaqI	TCGA	2 cut(s)	84, 177
TfiI	GAWTC	4 cut(s)	71, 86, 174, 195
TseFI	GTSAC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.