Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

18580818 .. 18585803

Gene Structure 4986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG124500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGAGGCTGCAGAGAATGTTCGCCGGTGCCGGAGGAGCTTTGGGCCACCCGCCGCCCGACTCCCCCACCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCTTGGCGCTCCTCAAAATGCTCAAGCACGGAAGAGCTGGGGTTCCAATGGAGGTCATGGGATTGATGCTGGGAGAGTTTGTGGATGAATACACTGTTCGTGTTGTTGACGTCTTTGCGATGCCGCAGAGTGGTACTGGTGTCAGTGTCGAAGCCGTCGATCATGTCTTTCAGACTAATATGCTTGATATGCTTAAGCAGACCGGACGACCAGAGATGGTAGTTGGGTGGTACCATTCGCATCCTGGATTTGGATGTTGGCTATCTGGTGTGGACATTAATACCCAGCAGAGCTTTGAAGCTTTGAATCAACGGGCTGTAGCTGTAGTGGTGGATCCAATTCAGAGTGTGAAGGGGAAGGTAGTCATTGATGCATTCCGCCTTATCAACCCACAAACTATGATGCTTGGCCAAGAACCACGGCAGACCACATCCAATCTCGGGCATCTAAATAAGCCATCAATTCAAGCCTTGATCCATGGGTTAAATCGTCATTATTACTCCATAGCAATTAATTATCGGAAGAATGAACTCGAGGAGAAAATGTTGCTTAACCTTCACAAGAAGAAATGGACAGATGGGCTGACACTAAAGCGATTTGACACTCATTCAAAAACAAATGAGCAAACAGTTCAGGAGATGTTAAATCTAGCTGTTAAATACAACAAGGCAGTGCAGGAGGAGGATGAGCTGCCACCAGAGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCTAAGAAGCACCTTGAAGAGCATGTCTCCAACTTAATGTCCTCAAACATTGTCCAGACCTTGGGCACAATGCTTGATACTGTGGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

309

Amino Acids

34.53

Weight (kDa)

6.31

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	27 - 138	8.8e-35	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB	PF14464	38 - 128	1.6e-06	Prokaryotic homologs of the JAB domain
RPN11_C	PF23594	228 - 307	1e-34	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	79
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	2 cut(s)	29, 333
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	4 cut(s)	53, 56, 227, 481
AclWI	GGATC	3 cut(s)	431, 444, 571
AcoI	YGGCCR	1 cut(s)	511
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	238, 335
AfiI	CCNNNNNNNGG	4 cut(s)	233, 353, 543, 898
AflII	CTTAAG	1 cut(s)	296
AgsI	TTSAA	5 cut(s)	401, 409, 569, 714, 854
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	8 cut(s)	41, 140, 396, 404, 425, 755, 793, 808
AluI	AGCT	8 cut(s)	41, 140, 396, 404, 425, 755, 793, 808
Alw26I	GTCTC	1 cut(s)	868
AlwI	GGATC	3 cut(s)	431, 444, 571
Ama87I	CYCGRG	2 cut(s)	542, 635
AoxI	GGCC	2 cut(s)	46, 511
ApeKI	GCWGC	2 cut(s)	10, 793
AseI	ATTAAT	2 cut(s)	381, 615
Asp718I	GGTACC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	46
AvaI	CYCGRG	2 cut(s)	542, 635
BaeGI	GKGCMC	1 cut(s)	905
BaeI	ACNNNNGTAYC	3 cut(s)	228, 261, 906
BalI	TGGCCA	1 cut(s)	513
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	2 cut(s)	29, 333
BbsI	GAAGAC	1 cut(s)	835
BbvI	GCAGC	1 cut(s)	780
BccI	CCATC	3 cut(s)	313, 568, 674
BceAI	ACGGC	2 cut(s)	242, 539
BciT130I	CCWGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	868
BfaI	CTAG	2 cut(s)	752, 928
BfmI	CTRYAG	3 cut(s)	11, 420, 426
BfoI	RGCGCY	1 cut(s)	113
BfrI	CTTAAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	4 cut(s)	11, 56, 227, 794
BlsI	GCNGC	4 cut(s)	12, 57, 228, 795
Bme1390I	CCNGG	1 cut(s)	348
BmeT110I	CYCGRG	2 cut(s)	542, 635
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	4 cut(s)	31, 147, 335, 438
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	7 cut(s)	159, 213, 352, 463, 495, 556, 826
BpiI	GAAGAC	1 cut(s)	835
BplI	GAGNNNNNCTC	2 cut(s)	848, 880
BpuEI	CTTGAG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	105, 521, 580, 897
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 168, 198, 632, 662
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 353, 543, 898
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	4 cut(s)	105, 521, 580, 897
BseGI	GGATG	5 cut(s)	193, 343, 362, 533, 793
BseLI	CCNNNNNNNGG	4 cut(s)	233, 353, 543, 898
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	5 cut(s)	51, 91, 104, 653, 797
BseSI	GKGCMC	1 cut(s)	905
BseXI	GCAGC	1 cut(s)	780
BseYI	CCCAGC	3 cut(s)	140, 172, 387
BsgI	GTGCAG	1 cut(s)	797
BshFI	GGCC	2 cut(s)	48, 513
BshNI	GGYRCC	2 cut(s)	29, 333
BsiHKCI	CYCGRG	2 cut(s)	542, 635
BsiSI	CCGG	3 cut(s)	27, 33, 306
BslI	CCNNNNNNNGG	4 cut(s)	233, 353, 543, 898
BsmAI	GTCTC	1 cut(s)	868
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	48, 513
BsoBI	CYCGRG	2 cut(s)	542, 635
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	3 cut(s)	262, 436, 576
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	4 cut(s)	53, 56, 227, 481
BspANI	GGCC	2 cut(s)	48, 513
BspLI	GGNNCC	4 cut(s)	31, 147, 335, 438
BspMAI	CTGCAG	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	3 cut(s)	431, 444, 571
BspQI	GCTCTTC	2 cut(s)	130, 849
BspT107I	GGYRCC	2 cut(s)	29, 333
BspTI	CTTAAG	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	4 cut(s)	105, 521, 580, 897
BssMI	GATC	3 cut(s)	262, 436, 576
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	3 cut(s)	105, 580, 897
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	199, 733, 919
Bst6I	CTCTTC	2 cut(s)	130, 849
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	1 cut(s)	840
BstDSI	CCRYGG	2 cut(s)	521, 580
BstF5I	GGATG	5 cut(s)	193, 343, 362, 533, 793
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	265, 439, 579
BstMAI	GTCTC	1 cut(s)	868
BstMBI	GATC	3 cut(s)	262, 436, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 292
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	3 cut(s)	11, 420, 426
BstSLI	GKGCMC	1 cut(s)	905
BstV1I	GCAGC	1 cut(s)	780
BstV2I	GAAGAC	1 cut(s)	835
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	48, 513
BtgI	CCRYGG	2 cut(s)	521, 580
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	5 cut(s)	193, 343, 362, 533, 793
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	195, 253, 780
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	810
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	237, 334
CviAII	CATG	4 cut(s)	160, 266, 581, 860
CviQI	GTAC	2 cut(s)	237, 334
DdeI	CTNAG	1 cut(s)	840
DpnI	GATC	3 cut(s)	264, 438, 578
DpnII	GATC	3 cut(s)	262, 436, 576
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	130, 849
EarI	CTCTTC	2 cut(s)	130, 849
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	3 cut(s)	105, 580, 897
Eco88I	CYCGRG	2 cut(s)	542, 635
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	3 cut(s)	105, 580, 897
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	3 cut(s)	105, 580, 897
FaeI	CATG	4 cut(s)	163, 269, 584, 863
FaiI	YATR	8 cut(s)	161, 267, 284, 293, 503, 582, 608, 861
FatI	CATG	4 cut(s)	159, 265, 580, 859
FauI	CCCGC	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	11, 56, 227, 794
FokI	GGATG	5 cut(s)	200, 330, 369, 520, 800
Fsp4HI	GCNGC	4 cut(s)	11, 56, 227, 794
FspBI	CTAG	2 cut(s)	752, 928
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	4 cut(s)	11, 56, 227, 794
GsaI	CCCAGC	3 cut(s)	144, 176, 391
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	48, 513
HapII	CCGG	3 cut(s)	27, 33, 306
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	4 cut(s)	163, 269, 584, 863
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	2 cut(s)	402, 806
HinfI	GANTC	3 cut(s)	62, 77, 409
HpaII	CCGG	3 cut(s)	27, 33, 306
Hpy166II	GTNNAC	3 cut(s)	94, 211, 376
Hpy188I	TCNGA	4 cut(s)	85, 276, 447, 624
Hpy188III	TCNNGA	2 cut(s)	737, 892
Hpy8I	GTNNAC	3 cut(s)	94, 211, 376
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	448, 454, 668
HpyCH4III	ACNGT	3 cut(s)	199, 733, 919
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	5 cut(s)	13, 476, 778, 812, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 292
HpyF3I	CTNAG	1 cut(s)	840
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	163, 269, 584, 863
HspAI	GCGC	1 cut(s)	110
KpnI	GGTACC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	262, 436, 576
LguI	GCTCTTC	2 cut(s)	130, 849
LmnI	GCTCC	2 cut(s)	38, 117
Lsp1109I	GCAGC	1 cut(s)	780
LweI	GCATC	7 cut(s)	159, 213, 352, 463, 495, 556, 826
MaeI	CTAG	2 cut(s)	752, 928
MaeII	ACGT	1 cut(s)	213
MalI	GATC	3 cut(s)	264, 438, 578
MboI	GATC	3 cut(s)	262, 436, 576
MboII	GAAGA	5 cut(s)	147, 637, 679, 840, 866
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	905
MlsI	TGGCCA	1 cut(s)	513
MluCI	AATT	5 cut(s)	441, 564, 612, 616, 813
MluNI	TGGCCA	1 cut(s)	513
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	891
Mox20I	TGGCCA	1 cut(s)	513
Mph1103I	ATGCAT	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	513
MseI	TTAA	8 cut(s)	297, 381, 587, 615, 654, 746, 759, 872
Msp20I	TGGCCA	1 cut(s)	513
MspCI	CTTAAG	1 cut(s)	296
MspI	CCGG	3 cut(s)	27, 33, 306
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	813
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	38, 292
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	3 cut(s)	262, 436, 576
NlaIII	CATG	4 cut(s)	163, 269, 584, 863
NlaIV	GGNNCC	4 cut(s)	31, 147, 335, 438
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	863
PaeR7I	CTCGAG	1 cut(s)	635
PciSI	GCTCTTC	2 cut(s)	130, 849
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 258
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	77, 409
PflMI	CCANNNNNTGG	1 cut(s)	898
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	4 cut(s)	12, 57, 228, 795
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PshBI	ATTAAT	2 cut(s)	381, 615
Psp6I	CCWGG	1 cut(s)	346
PspFI	CCCAGC	3 cut(s)	140, 172, 387
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	4 cut(s)	31, 147, 335, 438
PspPI	GGNCC	1 cut(s)	46
PspXI	VCTCGAGB	1 cut(s)	635
PstI	CTGCAG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	2 cut(s)	238, 335
RsaNI	GTAC	2 cut(s)	237, 334
SapI	GCTCTTC	2 cut(s)	130, 849
SaqAI	TTAA	8 cut(s)	297, 381, 587, 615, 654, 746, 759, 872
SatI	GCNGC	4 cut(s)	11, 56, 227, 794
Sau3AI	GATC	3 cut(s)	262, 436, 576
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	905
SfaNI	GCATC	7 cut(s)	159, 213, 352, 463, 495, 556, 826
SfcI	CTRYAG	3 cut(s)	11, 420, 426
Sfr274I	CTCGAG	1 cut(s)	635
SgrAI	CRCCGGYG	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	635
SmlI	CTYRAG	3 cut(s)	125, 296, 635
SmoI	CTYRAG	3 cut(s)	125, 296, 635
Sse9I	AATT	5 cut(s)	441, 564, 612, 616, 813
SsiI	CCGC	4 cut(s)	53, 56, 227, 481
SspMI	CTAG	2 cut(s)	752, 928
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	3 cut(s)	105, 580, 897
TaaI	ACNGT	3 cut(s)	199, 733, 919
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	4 cut(s)	75, 252, 261, 636
TasI	AATT	5 cut(s)	441, 564, 612, 616, 813
TauI	GCSGC	2 cut(s)	58, 229
TfiI	GAWTC	2 cut(s)	77, 409
Tru1I	TTAA	8 cut(s)	297, 381, 587, 615, 654, 746, 759, 872
Tru9I	TTAA	8 cut(s)	297, 381, 587, 615, 654, 746, 759, 872
TscAI	CASTG	3 cut(s)	202, 253, 780
TseI	GCWGC	2 cut(s)	10, 793
TspDTI	ATGAA	2 cut(s)	204, 645
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	3 cut(s)	202, 253, 780
Van91I	CCANNNNNTGG	1 cut(s)	898
Vha464I	CTTAAG	1 cut(s)	296
VspI	ATTAAT	2 cut(s)	381, 615
XceI	RCATGY	1 cut(s)	863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	752, 928
ZraI	GACGTC	1 cut(s)	214
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.