Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

23991265 .. 23993981

Gene Structure 2717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG243700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCCGCCTTTCTTAGTGAAGTCAAGATGGATCCATTTTATTTGGAGCACTATATTGTGGTCTGCAGCCAGCCAGCCATAGGAGTGGGACAAATGTCAAACATGGATGAGAGGCTTCAGAGGATGCTTGGAGGGGCTTTGGGCCACCCACGACCCGATTCACCCTCCCTCGATTCCTCCGAGCAGGTGTACATCTCCTCACTGGCCCTCCTCAAAATGCTCAAGCATGGAAGAGCCGGGGTTCCTATGGAGGTCATGGGGTTGATGCTCGGTGAGTTCGTGGACGATTACACAGTTCGTGTGGTTGATGTCTTTGCAATGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

108

Amino Acids

11.92

Weight (kDa)

4.95

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	59 - 108	2.1e-11	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	2 cut(s)	26, 39
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	80
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	26, 39
AoxI	GGCC	3 cut(s)	3, 142, 204
ApeKI	GCWGC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	142, 205
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	153, 284
BamHI	GGATCC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	238
BfmI	CTRYAG	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	2 cut(s)	6, 67
BlsI	GCNGC	2 cut(s)	7, 68
Bme1390I	CCNGG	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	142, 205
BmiI	GGNNCC	2 cut(s)	33, 243
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	114, 255
BoxI	GACNNNNGTC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	112, 129
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	2 cut(s)	187, 200
BseXI	GCAGC	1 cut(s)	78
BshFI	GGCC	3 cut(s)	5, 144, 206
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	3 cut(s)	5, 144, 206
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	3 cut(s)	5, 144, 206
BspLI	GGNNCC	2 cut(s)	33, 243
BspMAI	CTGCAG	1 cut(s)	68
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	26, 39
BspQI	GCTCTTC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	71, 75
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	112, 129
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstPAI	GACNNNNGTC	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	5, 144, 206
BtsCI	GGATG	2 cut(s)	112, 129
BtsIMutI	CAGTG	1 cut(s)	200
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	71, 75
Cfr13I	GGNCC	2 cut(s)	142, 205
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	103, 227, 256
CviJI	RGCY	9 cut(s)	5, 69, 73, 77, 115, 137, 144, 206, 236
CviKI_1	RGCY	9 cut(s)	5, 69, 73, 77, 115, 137, 144, 206, 236
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	101
FaeI	CATG	3 cut(s)	106, 230, 259
FaiI	YATR	6 cut(s)	54, 80, 104, 228, 248, 257
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	3 cut(s)	102, 226, 255
Fnu4HI	GCNGC	2 cut(s)	6, 67
FokI	GGATG	2 cut(s)	119, 136
Fsp4HI	GCNGC	2 cut(s)	6, 67
GluI	GCNGC	2 cut(s)	6, 67
HaeIII	GGCC	3 cut(s)	5, 144, 206
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	3 cut(s)	106, 230, 259
HinfI	GANTC	2 cut(s)	158, 173
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	153, 284
Hpy166II	GTNNAC	2 cut(s)	190, 283
Hpy188I	TCNGA	2 cut(s)	120, 181
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	2 cut(s)	190, 283
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	66, 317
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	106, 230, 259
Kzo9I	GATC	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	5 cut(s)	83, 87, 170, 188, 250
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	2 cut(s)	114, 255
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	243
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	238
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	106, 230, 259
NlaIV	GGNNCC	2 cut(s)	33, 243
PaqCI	CACCTGC	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 276
PfeI	GAWTC	2 cut(s)	158, 173
PkrI	GCNGC	2 cut(s)	7, 68
PshAI	GACNNNNGTC	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	33, 243
PspPI	GGNCC	2 cut(s)	142, 205
PstI	CTGCAG	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	226
SatI	GCNGC	2 cut(s)	6, 67
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	2 cut(s)	142, 205
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	2 cut(s)	189, 255
SfaNI	GCATC	2 cut(s)	114, 255
SfcI	CTRYAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SsiI	CCGC	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	171
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	158, 173
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	1 cut(s)	66
TspRI	CASTG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.