Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

26524303 .. 26524875

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18718

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGATGAGAGGCTTCAGAGGATGCTTGGAGGGGCTTTGGGCCACCCACGACCCGATTCACCCTCCCTCGATTCCTCCGAGCAGGTGTACATCTCCTCACTGGCCCTCCTCAAAATGCTCAAGCATGGAAGAGCCGGGGTTCCTATGGAGGTCATGGGGTTGATGCTCGGTGAGTTCAACGGTTCCGGTGTTAGTGTTGAAGCTGTGGATCATATATTCCAGACCAATATGCTTGGCATGCTTAAGCAGGCCGGGCGACCGGAGATGGTTGTTGGGAGGTACCATTCTCACCCTGGATTTGGTTGCTGGCTATCTGGTGTAGACATGAATACACAGCAAAGCTTTGAGGCTTTGAACAAACGTGCTGTGGCTGTGGTGGTGGATCCGATTCAAAGTGTCAAGGGCAAGGTGGTTATGGATGCGTTCCGCCTTATCAACCCCCAAACTATGATGTTTCATCAAGAACCGAGGCAGACCACATCCAATCTAGGGCTTCTCAATAAGCCATCCATTCATAGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

174

Amino Acids

19.1

Weight (kDa)

7.07

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	25 - 65	1e-06	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
JAB	PF01398	64 - 119	3.9e-13	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	73
Acc36I	ACCTGC	1 cut(s)	73
Acc65I	GGTACC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	3 cut(s)	216, 377, 390
AfaI	GTAC	2 cut(s)	89, 281
AfiI	CCNNNNNNNGG	2 cut(s)	299, 489
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	4 cut(s)	178, 200, 355, 392
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	203, 342
AluI	AGCT	2 cut(s)	203, 342
AlwI	GGATC	3 cut(s)	216, 377, 390
AoxI	GGCC	3 cut(s)	40, 102, 249
Asp718I	GGTACC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	40, 103
AsuC2I	CCSGG	2 cut(s)	136, 253
AsuHPI	GGTGA	3 cut(s)	51, 182, 281
BamHI	GGATCC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	279
BccI	CCATC	2 cut(s)	259, 514
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	2 cut(s)	136, 253
BfaI	CTAG	1 cut(s)	488
BfrI	CTTAAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	73
Bme1390I	CCNGG	3 cut(s)	136, 253, 294
BmgT120I	GGNCC	2 cut(s)	40, 103
BmiI	GGNNCC	4 cut(s)	141, 184, 281, 384
BmrFI	CCNGG	3 cut(s)	136, 253, 294
BmsI	GCATC	3 cut(s)	12, 153, 409
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	2 cut(s)	136, 253
BsaJI	CCNNGG	3 cut(s)	135, 292, 467
BsaWI	WCCGGW	2 cut(s)	185, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 489
Bse1I	ACTGG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	135, 292, 467
BseGI	GGATG	5 cut(s)	10, 27, 424, 479, 506
BseLI	CCNNNNNNNGG	2 cut(s)	299, 489
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	2 cut(s)	85, 98
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	42, 104, 251
BshNI	GGYRCC	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	135, 186, 252, 260
BslI	CCNNNNNNNGG	2 cut(s)	299, 489
BsnI	GGCC	3 cut(s)	42, 104, 251
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	208, 382
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	3 cut(s)	42, 104, 251
BspLI	GGNNCC	4 cut(s)	141, 184, 281, 384
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	3 cut(s)	216, 377, 390
BspQI	GCTCTTC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	279
BspTI	CTTAAG	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	135, 292, 467
BssMI	GATC	2 cut(s)	208, 382
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	124
BstAFI	CTTAAG	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	239, 249, 308
BstF5I	GGATG	5 cut(s)	10, 27, 424, 479, 506
BstKTI	GATC	2 cut(s)	211, 385
BstMBI	GATC	2 cut(s)	208, 382
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 253
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	134, 251, 292
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	42, 104, 251
BtsCI	GGATG	5 cut(s)	10, 27, 424, 479, 506
BtsIMutI	CAGTG	1 cut(s)	98
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	3 cut(s)	239, 249, 308
Cfr13I	GGNCC	2 cut(s)	40, 103
Csp6I	GTAC	2 cut(s)	88, 280
CviAII	CATG	4 cut(s)	125, 154, 238, 325
CviQI	GTAC	2 cut(s)	88, 280
DpnI	GATC	2 cut(s)	210, 384
DpnII	GATC	2 cut(s)	208, 382
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	4 cut(s)	128, 157, 241, 328
FatI	CATG	4 cut(s)	124, 153, 237, 324
FblI	GTMKAC	1 cut(s)	321
FokI	GGATG	5 cut(s)	17, 34, 431, 466, 493
FspBI	CTAG	1 cut(s)	488
HaeIII	GGCC	3 cut(s)	42, 104, 251
HapII	CCGG	4 cut(s)	135, 186, 252, 260
Hin1II	CATG	4 cut(s)	128, 157, 241, 328
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	3 cut(s)	56, 71, 388
HpaII	CCGG	4 cut(s)	135, 186, 252, 260
HphI	GGTGA	3 cut(s)	51, 182, 281
Hpy166II	GTNNAC	2 cut(s)	88, 322
Hpy188I	TCNGA	3 cut(s)	18, 79, 387
Hpy188III	TCNNGA	2 cut(s)	220, 461
Hpy8I	GTNNAC	2 cut(s)	88, 322
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 253
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	4 cut(s)	128, 157, 241, 328
KpnI	GGTACC	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	208, 382
LguI	GCTCTTC	1 cut(s)	124
LweI	GCATC	3 cut(s)	12, 153, 409
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	361
MalI	GATC	2 cut(s)	210, 384
MboI	GATC	2 cut(s)	208, 382
MboII	GAAGA	1 cut(s)	141
MflI	RGATCY	1 cut(s)	382
MseI	TTAA	2 cut(s)	243, 523
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	4 cut(s)	135, 186, 252, 260
MspR9I	CCNGG	3 cut(s)	136, 253, 294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	238, 253
NciI	CCSGG	2 cut(s)	136, 253
NdeII	GATC	2 cut(s)	208, 382
NlaIII	CATG	4 cut(s)	128, 157, 241, 328
NlaIV	GGNNCC	4 cut(s)	141, 184, 281, 384
NspI	RCATGY	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	241
PaqCI	CACCTGC	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	56, 71, 388
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	4 cut(s)	141, 184, 281, 384
PspPI	GGNCC	2 cut(s)	40, 103
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	2 cut(s)	89, 281
RsaNI	GTAC	2 cut(s)	88, 280
SapI	GCTCTTC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	243, 523
Sau3AI	GATC	2 cut(s)	208, 382
Sau96I	GGNCC	2 cut(s)	40, 103
ScrFI	CCNGG	3 cut(s)	136, 253, 294
SetI	ASST	7 cut(s)	87, 153, 205, 281, 344, 364, 411
SfaNI	GCATC	3 cut(s)	12, 153, 409
SmlI	CTYRAG	2 cut(s)	119, 242
SmoI	CTYRAG	2 cut(s)	119, 242
SphI	GCATGC	1 cut(s)	241
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	3 cut(s)	134, 251, 292
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	69
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	3 cut(s)	56, 71, 388
Tru1I	TTAA	2 cut(s)	243, 523
Tru9I	TTAA	2 cut(s)	243, 523
TscAI	CASTG	1 cut(s)	105
TspDTI	ATGAA	3 cut(s)	341, 446, 503
TspRI	CASTG	1 cut(s)	105
Vha464I	CTTAAG	1 cut(s)	242
XceI	RCATGY	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.