Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038305.1

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

4091 .. 4848

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038305.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atggatgagaggcttcagaggatgcttggaggggctttgggccacccacgacccgattcaccctccctcgattcctccgagcaggtctacatctcctcactggccctcctcaaactgctcaagcatggaagagccggggttcctatggaggtcatggggttaatgctcggtgagttcgtggacgattacacaaccaatatgcttggcatgcttaagcagaccggacgaccggagatggttgttgggaggtaccattctcaccctggatttggttgctggctatctggtgtagacctgaatacacagcaaagctttgaggctttgaacaaacgtgctgtggctgtggcggtggatccgattcaaagtgtcaagggcaaggtggttatggatgcgctccgccttatcaacccccaaactatgatgtttggtcaagaaccgaggcagaccacatccaatctagggcatctcaataagccatccattcatagcattaactacaggaagaatgaacttgaggagaagatgttgcttaatcttcataagaagaattgggcagattggctgacacttgcgcgttttgatactcattcaaagacaaatgtgcaaactgttaaggaaatgttaaccctagcgtccctagctgtgaagtacgtacaacgaggcggtgcaggaggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

226

Amino Acids

25.08

Weight (kDa)

9.32

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	249
AccI	GTMKAC	2 cut(s)	87, 291
AccII	CGCG	1 cut(s)	574
AciI	CCGC	3 cut(s)	347, 397, 663
AclWI	GGATC	2 cut(s)	347, 360
AfaI	GTAC	3 cut(s)	251, 650, 654
AfiI	CCNNNNNNNGG	2 cut(s)	269, 459
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	325, 362, 591
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	2 cut(s)	312, 641
AluI	AGCT	2 cut(s)	312, 641
AlwI	GGATC	2 cut(s)	347, 360
AoxI	GGCC	2 cut(s)	40, 102
Asp718I	GGTACC	1 cut(s)	249
AspLEI	GCGC	2 cut(s)	394, 574
AspS9I	GGNCC	2 cut(s)	40, 103
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	51, 182, 251
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	249
BccI	CCATC	2 cut(s)	229, 484
BciT130I	CCWGG	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	136
BfaI	CTAG	3 cut(s)	458, 629, 638
BfmI	CTRYAG	1 cut(s)	496
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	136, 264
BmgT120I	GGNCC	2 cut(s)	40, 103
BmiI	GGNNCC	3 cut(s)	141, 251, 354
BmrFI	CCNGG	2 cut(s)	136, 264
BmsI	GCATC	3 cut(s)	12, 379, 472
BpuEI	CTTGAG	2 cut(s)	104, 533
BpuMI	CCSGG	1 cut(s)	136
BsaAI	YACGTR	1 cut(s)	652
BsaJI	CCNNGG	3 cut(s)	135, 262, 437
BsaWI	WCCGGW	2 cut(s)	221, 229
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 509, 539
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 459
Bse1I	ACTGG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	135, 262, 437
BseGI	GGATG	5 cut(s)	10, 27, 394, 449, 476
BseLI	CCNNNNNNNGG	2 cut(s)	269, 459
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	3 cut(s)	85, 98, 530
Bsh1236I	CGCG	1 cut(s)	574
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	42, 104
BshNI	GGYRCC	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	135, 222, 230
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	2 cut(s)	269, 459
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	2 cut(s)	42, 104
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	3 cut(s)	347, 397, 663
BspANI	GGCC	2 cut(s)	42, 104
BspFNI	CGCG	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	141, 251, 354
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	2 cut(s)	347, 360
BspQI	GCTCTTC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	249
BspTI	CTTAAG	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	135, 262, 437
BssMI	GATC	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	1 cut(s)	124
BstAFI	CTTAAG	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	652
BstC8I	GCNNGC	2 cut(s)	209, 278
BstF5I	GGATG	5 cut(s)	10, 27, 394, 449, 476
BstFNI	CGCG	1 cut(s)	574
BstHHI	GCGC	2 cut(s)	394, 574
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 638
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	134, 262
BstSFI	CTRYAG	1 cut(s)	496
BstSNI	TACGTA	1 cut(s)	652
BstUI	CGCG	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	42, 104
BtsCI	GGATG	5 cut(s)	10, 27, 394, 449, 476
BtsIMutI	CAGTG	1 cut(s)	98
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	209, 278
CfoI	GCGC	2 cut(s)	394, 574
Cfr13I	GGNCC	2 cut(s)	40, 103
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	3 cut(s)	250, 649, 653
CviAII	CATG	3 cut(s)	125, 154, 208
CviQI	GTAC	3 cut(s)	250, 649, 653
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	386
Eco105I	TACGTA	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	262
FaeI	CATG	3 cut(s)	128, 157, 211
FaiI	YATR	9 cut(s)	126, 146, 155, 200, 209, 386, 419, 486, 540
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	3 cut(s)	124, 153, 207
FblI	GTMKAC	2 cut(s)	87, 291
FokI	GGATG	5 cut(s)	17, 34, 401, 436, 463
FspBI	CTAG	3 cut(s)	458, 629, 638
GlaI	GCGC	2 cut(s)	393, 573
HaeIII	GGCC	2 cut(s)	42, 104
HapII	CCGG	3 cut(s)	135, 222, 230
HgaI	GACGC	1 cut(s)	621
HhaI	GCGC	2 cut(s)	394, 574
Hin1II	CATG	3 cut(s)	128, 157, 211
Hin6I	GCGC	2 cut(s)	392, 572
HinP1I	GCGC	2 cut(s)	392, 572
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	3 cut(s)	56, 71, 358
HpaI	GTTAAC	1 cut(s)	624
HpaII	CCGG	3 cut(s)	135, 222, 230
HphI	GGTGA	3 cut(s)	51, 182, 251
Hpy166II	GTNNAC	4 cut(s)	88, 181, 292, 624
Hpy188I	TCNGA	3 cut(s)	18, 79, 357
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	4 cut(s)	88, 181, 292, 624
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	2 cut(s)	331, 651
HpyCH4V	TGCA	2 cut(s)	604, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 638
HpySE526I	ACGT	2 cut(s)	331, 651
Hsp92II	CATG	3 cut(s)	128, 157, 211
HspAI	GCGC	2 cut(s)	392, 572
KpnI	GGTACC	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	624
Kzo9I	GATC	1 cut(s)	352
LguI	GCTCTTC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	399
LweI	GCATC	3 cut(s)	12, 379, 472
MaeI	CTAG	3 cut(s)	458, 629, 638
MaeII	ACGT	2 cut(s)	331, 651
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	5 cut(s)	141, 514, 527, 532, 556
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	1 cut(s)	547
MseI	TTAA	6 cut(s)	161, 213, 492, 531, 612, 623
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	3 cut(s)	135, 222, 230
MspR9I	CCNGG	2 cut(s)	136, 264
MvaI	CCWGG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	2 cut(s)	208, 638
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	128, 157, 211
NlaIV	GGNNCC	3 cut(s)	141, 251, 354
NspI	RCATGY	1 cut(s)	211
PaeI	GCATGC	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 174
PfeI	GAWTC	3 cut(s)	56, 71, 358
Ppu21I	YACGTR	1 cut(s)	652
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	3 cut(s)	141, 251, 354
PspPI	GGNCC	2 cut(s)	40, 103
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	3 cut(s)	251, 650, 654
RsaNI	GTAC	3 cut(s)	250, 649, 653
SapI	GCTCTTC	1 cut(s)	124
SaqAI	TTAA	6 cut(s)	161, 213, 492, 531, 612, 623
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	40, 103
ScrFI	CCNGG	2 cut(s)	136, 264
SetI	ASST	9 cut(s)	87, 153, 251, 297, 314, 334, 381, 643, 654
SfaNI	GCATC	3 cut(s)	12, 379, 472
SfcI	CTRYAG	1 cut(s)	496
SmlI	CTYRAG	3 cut(s)	119, 212, 512
SmoI	CTYRAG	3 cut(s)	119, 212, 512
SnaBI	TACGTA	1 cut(s)	652
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	1 cut(s)	547
SsiI	CCGC	3 cut(s)	347, 397, 663
SspMI	CTAG	3 cut(s)	458, 629, 638
StyD4I	CCNGG	2 cut(s)	134, 262
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	2 cut(s)	334, 654
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	547
TfiI	GAWTC	3 cut(s)	56, 71, 358
Tru1I	TTAA	6 cut(s)	161, 213, 492, 531, 612, 623
Tru9I	TTAA	6 cut(s)	161, 213, 492, 531, 612, 623
TscAI	CASTG	1 cut(s)	105
TspDTI	ATGAA	3 cut(s)	473, 522, 527
TspRI	CASTG	1 cut(s)	105
Vha464I	CTTAAG	1 cut(s)	212
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmiI	GTMKAC	2 cut(s)	87, 291
XspI	CTAG	3 cut(s)	458, 629, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.