Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

19102809 .. 19102970

Gene Structure 162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23676

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGTCAGGTATGGAGAGGCTGCAGAGAATCTTCGCCGGTGCCGGAGGAGCTTTGGGCCACCCGCCGCCCGACTCCCCCACCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCTTGGTGCTCCTCAAAATGCTCAAGCACGGTAACTCTACGCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

53

Amino Acids

5.62

Weight (kDa)

6.01

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	2 cut(s)	62, 65
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw21I	GWGCWC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	20, 65
BlsI	GCNGC	2 cut(s)	21, 66
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bse118I	RCCGGY	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	114
BseRI	GAGGAG	3 cut(s)	60, 100, 113
BseXI	GCAGC	1 cut(s)	6
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	36, 42
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	123
BspACI	CCGC	2 cut(s)	62, 65
BspANI	GGCC	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	55
CviJI	RGCY	3 cut(s)	19, 50, 57
CviKI_1	RGCY	3 cut(s)	19, 50, 57
Eco130I	CCWWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaiI	YATR	1 cut(s)	11
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	20, 65
Fsp4HI	GCNGC	2 cut(s)	20, 65
GluI	GCNGC	2 cut(s)	20, 65
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	2 cut(s)	36, 42
HinfI	GANTC	3 cut(s)	27, 71, 86
HpaII	CCGG	2 cut(s)	36, 42
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
LmnI	GCTCC	2 cut(s)	47, 126
LpnPI	CCDG	3 cut(s)	49, 55, 83
Lsp1109I	GCAGC	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	9, 38, 92, 100, 121, 134
MspI	CCGG	2 cut(s)	36, 42
MwoI	GCNNNNNNNGC	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	27, 86
PkrI	GCNGC	2 cut(s)	21, 66
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	24
SatI	GCNGC	2 cut(s)	20, 65
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	3 cut(s)	10, 52, 102
SfcI	CTRYAG	1 cut(s)	20
SgrAI	CRCCGGYG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SsiI	CCGC	2 cut(s)	62, 65
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	84
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	27, 86
TseI	GCWGC	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.