Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

51312570 .. 51321528

Gene Structure 8959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG314100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGGATGTTCTAGAGTTCAAGGCCCCCATTTCGGAGACGAATCGGAGCAACTGTGAAAGAAGTGCGCTTCGTGTTTCCGAGAGTGGTACTGGTGTTAGTGTTGAAGCAGTGGATCATGTGTTCCAGACTAACATGCTCGATATGCTTAAGCAGATTGGAAGACCAGAGATGGTTGTAGGGTGGTACCATTCGCATCCTAGATTTGGCTGTTGGCTATCTGGTGTAGACATTAATACACAGCAGAGCTTTGAAGCTTTGAATCAACATGTTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGAGGAAGGTGGTCATTGATACCTTCCGCCTTATCAACCCACAGACTATGATGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTGAGCCATCTTAATAAACCATCTATTCAAGCAAAAACTTTTGATTATGGTTCAGTTCGTTTGATTGATGAACCATGCAGGTTAACTCATCTAGCTGCGATGAGCACGGCCAAGAAGTCTGGTTGCATCCTTTCTTATGATCCAAATTTGCGACTGCCATTGTGGCCATCAGCAGAGGCTGCAAGCAAAGAAATACTGAGCATATATATGGGATCTAGCAGATATTATCAAAGCAAAGATATAGATCAGAGGGTTGCAGATATTACAACTCAAAATTTCAGGGGTCGTTTTGCTGGTATTAAAGTTAAACCGGTTAATACAACTGGTGCTGGCGATGCATTTGTGAGTGGGATGCTCAACAGCATAGCTTCTTACTTGAGTCTTTTTCAGGCCAACACAAAAGAATATGTCCTATCTGTTACTACTGCCATGGGCAAATTTATGGATGCAGTTGTACTGGTGTATGAACAAACAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

290

Amino Acids

32.17

Weight (kDa)

8.28

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	23 - 89	2.2e-17	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
PfkB	PF00294	227 - 259	4.5e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	462
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	5 cut(s)	123, 284, 297, 527, 613
AcoI	YGGCCR	2 cut(s)	501, 557
AcsI	RAATTY	3 cut(s)	538, 667, 830
AfaI	GTAC	3 cut(s)	91, 188, 849
AfiI	CCNNNNNNNGG	2 cut(s)	34, 206
AflII	CTTAAG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	268
AgeI	ACCGGT	1 cut(s)	703
AgsI	TTSAA	5 cut(s)	22, 107, 254, 262, 422
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	4 cut(s)	249, 257, 488, 761
AluI	AGCT	4 cut(s)	249, 257, 488, 761
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	5 cut(s)	123, 284, 297, 527, 613
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	4 cut(s)	24, 501, 557, 783
ApeKI	GCWGC	2 cut(s)	488, 572
ApoI	RAATTY	3 cut(s)	538, 667, 830
AseI	ATTAAT	1 cut(s)	234
AsiGI	ACCGGT	1 cut(s)	703
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	25
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BalI	TGGCCA	1 cut(s)	559
BamHI	GGATCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	475, 559
BccI	CCATC	4 cut(s)	166, 408, 421, 568
BceAI	ACGGC	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	4 cut(s)	14, 201, 485, 609
BfrI	CTTAAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	462
BglI	GCCNNNNNGGC	1 cut(s)	556
BisI	GCNGC	2 cut(s)	489, 573
BlsI	GCNGC	2 cut(s)	490, 574
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	3 cut(s)	27, 188, 291
BmsI	GCATC	6 cut(s)	205, 348, 528, 718, 735, 829
BpiI	GAAGAC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	790
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	374, 822
BsaWI	WCCGGW	1 cut(s)	703
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 206
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	3 cut(s)	97, 721, 855
Bse8I	GATNNNNATC	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	374, 822
BseGI	GGATG	6 cut(s)	13, 196, 386, 519, 750, 844
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	34, 206
BseMII	CTCAG	2 cut(s)	386, 581
BseNI	ACTGG	3 cut(s)	97, 721, 855
BseXI	GCAGC	2 cut(s)	475, 559
BshFI	GGCC	4 cut(s)	26, 503, 559, 785
BshNI	GGYRCC	1 cut(s)	186
BshTI	ACCGGT	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	704
BslI	CCNNNNNNNGG	2 cut(s)	34, 206
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsnI	GGCC	4 cut(s)	26, 503, 559, 785
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	5 cut(s)	115, 289, 532, 605, 637
Bsp19I	CCATGG	1 cut(s)	822
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	4 cut(s)	26, 503, 559, 785
BspCNI	CTCAG	2 cut(s)	387, 582
BspLI	GGNNCC	3 cut(s)	27, 188, 291
BspMI	ACCTGC	1 cut(s)	462
BspPI	GGATC	5 cut(s)	123, 284, 297, 527, 613
BspT107I	GGYRCC	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	703
BsrI	ACTGG	3 cut(s)	97, 721, 855
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	2 cut(s)	374, 822
BssMI	GATC	5 cut(s)	115, 289, 532, 605, 637
BssT1I	CCWWGG	1 cut(s)	822
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	577, 724
BstDEI	CTNAG	2 cut(s)	395, 590
BstDSI	CCRYGG	1 cut(s)	822
BstF5I	GGATG	6 cut(s)	13, 196, 386, 519, 750, 844
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	5 cut(s)	118, 292, 535, 608, 640
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	5 cut(s)	115, 289, 532, 605, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 556, 572, 728
BstNSI	RCATGY	2 cut(s)	139, 272
BstV1I	GCAGC	2 cut(s)	475, 559
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	2 cut(s)	289, 605
BstYI	RGATCY	2 cut(s)	289, 605
BsuRI	GGCC	4 cut(s)	26, 503, 559, 785
BtgI	CCRYGG	1 cut(s)	822
BtgZI	GCGATG	2 cut(s)	506, 741
BtsCI	GGATG	6 cut(s)	13, 196, 386, 519, 750, 844
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	577, 724
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	703
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	90, 187, 848
CspAI	ACCGGT	1 cut(s)	703
CviAII	CATG	5 cut(s)	119, 136, 269, 468, 823
CviQI	GTAC	3 cut(s)	90, 187, 848
DdeI	CTNAG	2 cut(s)	395, 590
DpnI	GATC	5 cut(s)	117, 291, 534, 607, 639
DpnII	GATC	5 cut(s)	115, 289, 532, 605, 637
EaeI	YGGCCR	2 cut(s)	501, 557
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	822
EcoO109I	RGGNCCY	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	822
EcoT22I	ATGCAT	1 cut(s)	733
ErhI	CCWWGG	1 cut(s)	822
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	5 cut(s)	122, 139, 272, 471, 826
FatI	CATG	5 cut(s)	118, 135, 268, 467, 822
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	489, 573
FokI	GGATG	6 cut(s)	20, 183, 373, 506, 757, 851
Fsp4HI	GCNGC	2 cut(s)	489, 573
FspBI	CTAG	4 cut(s)	14, 201, 485, 609
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	489, 573
HaeIII	GGCC	4 cut(s)	26, 503, 559, 785
HapII	CCGG	1 cut(s)	704
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	5 cut(s)	122, 139, 272, 471, 826
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	3 cut(s)	43, 262, 772
HpaI	GTTAAC	1 cut(s)	477
HpaII	CCGG	1 cut(s)	704
Hpy166II	GTNNAC	2 cut(s)	229, 477
Hpy188I	TCNGA	6 cut(s)	37, 48, 82, 300, 396, 642
Hpy188III	TCNNGA	3 cut(s)	14, 127, 368
Hpy8I	GTNNAC	2 cut(s)	229, 477
HpyAV	CCTTC	2 cut(s)	307, 340
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	6 cut(s)	471, 519, 575, 650, 731, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 556, 572, 728
HpyF3I	CTNAG	2 cut(s)	395, 590
Hsp92II	CATG	5 cut(s)	122, 139, 272, 471, 826
HspAI	GCGC	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	5 cut(s)	115, 289, 532, 605, 637
LmnI	GCTCC	1 cut(s)	48
Lsp1109I	GCAGC	2 cut(s)	475, 559
LweI	GCATC	6 cut(s)	205, 348, 528, 718, 735, 829
MaeI	CTAG	4 cut(s)	14, 201, 485, 609
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	5 cut(s)	117, 291, 534, 607, 639
MboI	GATC	5 cut(s)	115, 289, 532, 605, 637
MboII	GAAGA	2 cut(s)	174, 319
MflI	RGATCY	2 cut(s)	289, 605
MhlI	GDGCHC	1 cut(s)	500
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	4 cut(s)	294, 538, 667, 830
MluNI	TGGCCA	1 cut(s)	559
MlyI	GAGTC	1 cut(s)	781
MnlI	CCTC	4 cut(s)	303, 384, 562, 636
Mox20I	TGGCCA	1 cut(s)	559
Mph1103I	ATGCAT	1 cut(s)	733
MscI	TGGCCA	1 cut(s)	559
MseI	TTAA	7 cut(s)	150, 234, 405, 476, 693, 699, 708
MslI	CAYNNNNRTG	1 cut(s)	599
Msp20I	TGGCCA	1 cut(s)	559
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	704
MwoI	GCNNNNNNNGC	4 cut(s)	145, 556, 572, 728
NcoI	CCATGG	1 cut(s)	822
NdeII	GATC	5 cut(s)	115, 289, 532, 605, 637
NlaIII	CATG	5 cut(s)	122, 139, 272, 471, 826
NlaIV	GGNNCC	3 cut(s)	27, 188, 291
NmeAIII	GCCGAG	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	2 cut(s)	139, 272
PciI	ACATGT	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	43, 262
PinAI	ACCGGT	1 cut(s)	703
PkrI	GCNGC	2 cut(s)	490, 574
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
PscI	ACATGT	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	27, 188, 291
PspPI	GGNCC	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	289, 605
RsaI	GTAC	3 cut(s)	91, 188, 849
RsaNI	GTAC	3 cut(s)	90, 187, 848
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	7 cut(s)	150, 234, 405, 476, 693, 699, 708
SatI	GCNGC	2 cut(s)	489, 573
Sau3AI	GATC	5 cut(s)	115, 289, 532, 605, 637
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	781
SduI	GDGCHC	1 cut(s)	500
SetI	ASST	8 cut(s)	251, 259, 318, 332, 376, 476, 490, 763
SfaNI	GCATC	6 cut(s)	205, 348, 528, 718, 735, 829
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	2 cut(s)	149, 769
SmoI	CTYRAG	2 cut(s)	149, 769
Sse9I	AATT	4 cut(s)	294, 538, 667, 830
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	4 cut(s)	14, 201, 485, 609
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	141
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	4 cut(s)	294, 538, 667, 830
TatI	WGTACW	1 cut(s)	847
TfiI	GAWTC	2 cut(s)	43, 262
Tru1I	TTAA	7 cut(s)	150, 234, 405, 476, 693, 699, 708
Tru9I	TTAA	7 cut(s)	150, 234, 405, 476, 693, 699, 708
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	2 cut(s)	488, 572
TspDTI	ATGAA	2 cut(s)	477, 873
TspRI	CASTG	1 cut(s)	117
Vha464I	CTTAAG	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	3 cut(s)	538, 667, 830
XbaI	TCTAGA	1 cut(s)	13
XceI	RCATGY	2 cut(s)	139, 272
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	4 cut(s)	14, 201, 485, 609
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.