Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

13025832 .. 13028031

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAATCCGAGTTCTTGTTTCCTTTCTCGTTCAGCACCCAACCTCCTCCTCTATCTCCGAACGGCACCGAATCGTCCTCTTCTTCCTTCTCCGCCTCCGCCTCCGACCAGAACCCGACCCTTCTCCGCCTCTAACCAGCACCGACTAAGAACGAAGAGGAGAGACCGGTGTGAGGGGTTAGGGCTCAAAGATGGTGGATGTTCTAGAGTTCAAGGCCCCGTTTCGAGACTAATCGAAGCAACCGCGAAAGAAAGTGGTACTAGTGTTAGTGTTGAAGCAGTGGATCATGTGTTCCGGACTAACATGCTCGATATGCTTAAGCGATTGGAAGCTTTGAATCAACATGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGAGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCAACAGACTATGATGCTCGGTCAAGAACCTCGGCAGACCACATCCAATTTGGGCCATCTTAATAAACCATCTATTCAATACTCTATAGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTAACCTTCATAAGAAGGGACAGTTATCATATTGTTCAAATAAAGGATGGTGCATAGTTGGTGCTGGGAAGGCAGGTGGACAGCTAGATTTGATCCCACATCCCACCACTTCCTCCAACCATTTCACCCAATGTGAAGCTAAAAGTCCTGATTTCTCTCAAGTATTATGTACCAATTCATTATCAAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

247

Amino Acids

27.42

Weight (kDa)

9.81

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	614
Acc36I	ACCTGC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	64
AccII	CGCG	1 cut(s)	245
AccIII	TCCGGA	1 cut(s)	294
AciI	CCGC	5 cut(s)	92, 98, 126, 243, 409
AclWI	GGATC	4 cut(s)	291, 359, 372, 637
AfaI	GTAC	3 cut(s)	259, 721, 740
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflII	CTTAAG	1 cut(s)	317
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	5 cut(s)	212, 275, 337, 497, 588
AhlI	ACTAGT	1 cut(s)	260
AloI	GAACNNNNNNTCC	2 cut(s)	275, 307
AluBI	AGCT	3 cut(s)	332, 634, 689
AluI	AGCT	3 cut(s)	332, 634, 689
Alw26I	GTCTC	2 cut(s)	156, 220
AlwI	GGATC	4 cut(s)	291, 359, 372, 637
Ama87I	CYCGRG	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	294
AoxI	GGCC	2 cut(s)	214, 472
AsiGI	ACCGGT	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	215, 472
AsuHPI	GGTGA	1 cut(s)	667
AvaI	CYCGRG	1 cut(s)	533
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BamHI	GGATCC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	186
BccI	CCATC	4 cut(s)	185, 483, 496, 591
BceAI	ACGGC	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	156, 220
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	4 cut(s)	204, 261, 635, 742
BfmI	CTRYAG	1 cut(s)	504
BfrI	CTTAAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	614
BmcAI	AGTACT	1 cut(s)	740
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	2 cut(s)	215, 472
BmiI	GGNNCC	3 cut(s)	66, 217, 366
BmsI	GCATC	2 cut(s)	391, 423
BpuEI	CTTGAG	1 cut(s)	693
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	449
BsaWI	WCCGGW	2 cut(s)	165, 294
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 530, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	4 cut(s)	203, 461, 602, 649
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseRI	GAGGAG	4 cut(s)	35, 38, 172, 551
BseYI	CCCAGC	1 cut(s)	614
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	216, 474
BshNI	GGYRCC	1 cut(s)	64
BshTI	ACCGGT	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	2 cut(s)	166, 295
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	156, 220
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	216, 474
Bso31I	GGTCTC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	283, 364, 642
BspACI	CCGC	5 cut(s)	92, 98, 126, 243, 409
BspANI	GGCC	2 cut(s)	216, 474
BspEI	TCCGGA	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	3 cut(s)	66, 217, 366
BspMI	ACCTGC	1 cut(s)	614
BspPI	GGATC	4 cut(s)	291, 359, 372, 637
BspT107I	GGYRCC	1 cut(s)	64
BspTI	CTTAAG	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	3 cut(s)	283, 364, 642
Bst4CI	ACNGT	1 cut(s)	573
Bst6I	CTCTTC	3 cut(s)	84, 149, 377
BstAFI	CTTAAG	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	4 cut(s)	203, 461, 602, 649
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	3 cut(s)	286, 367, 645
BstMAI	GTCTC	2 cut(s)	156, 220
BstMBI	GATC	3 cut(s)	283, 364, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 620
BstNSI	RCATGY	2 cut(s)	307, 347
BstSFI	CTRYAG	1 cut(s)	504
BstUI	CGCG	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	216, 474
BtsCI	GGATG	4 cut(s)	203, 461, 602, 649
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	614
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	215, 472
Csp6I	GTAC	3 cut(s)	258, 720, 739
CspAI	ACCGGT	1 cut(s)	165
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	3 cut(s)	287, 304, 344
CviJI	RGCY	6 cut(s)	184, 216, 332, 474, 634, 689
CviKI_1	RGCY	6 cut(s)	184, 216, 332, 474, 634, 689
CviQI	GTAC	3 cut(s)	258, 720, 739
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	3 cut(s)	285, 366, 644
DpnII	GATC	3 cut(s)	283, 364, 642
Eam1104I	CTCTTC	3 cut(s)	84, 149, 377
EarI	CTCTTC	3 cut(s)	84, 149, 377
EciI	GGCGGA	4 cut(s)	81, 87, 115, 398
Eco24I	GRGCYC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	3 cut(s)	290, 307, 347
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	3 cut(s)	286, 303, 343
FokI	GGATG	4 cut(s)	210, 448, 609, 636
FriOI	GRGCYC	1 cut(s)	186
FspBI	CTAG	4 cut(s)	204, 261, 635, 742
GsaI	CCCAGC	1 cut(s)	618
HaeIII	GGCC	2 cut(s)	216, 474
HapII	CCGG	2 cut(s)	166, 295
Hin1II	CATG	3 cut(s)	290, 307, 347
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	3 cut(s)	4, 70, 337
HpaII	CCGG	2 cut(s)	166, 295
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	1 cut(s)	629
Hpy188I	TCNGA	4 cut(s)	9, 59, 105, 375
Hpy188III	TCNNGA	5 cut(s)	204, 225, 295, 443, 698
Hpy8I	GTNNAC	1 cut(s)	629
HpyAV	CCTTC	7 cut(s)	96, 130, 382, 415, 559, 566, 613
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4V	TGCA	1 cut(s)	603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 620
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	290, 307, 347
Kpn2I	TCCGGA	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	283, 364, 642
LpnPI	CCDG	8 cut(s)	121, 149, 179, 308, 505, 600, 609, 711
LweI	GCATC	2 cut(s)	391, 423
MaeI	CTAG	4 cut(s)	204, 261, 635, 742
MalI	GATC	3 cut(s)	285, 366, 644
MboI	GATC	3 cut(s)	283, 364, 642
MboII	GAAGA	6 cut(s)	71, 74, 166, 394, 535, 553
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	4 cut(s)	369, 466, 514, 724
MmeI	TCCRAC	2 cut(s)	128, 690
MroI	TCCGGA	1 cut(s)	294
MseI	TTAA	3 cut(s)	318, 480, 552
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	2 cut(s)	166, 295
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	313, 620
NdeII	GATC	3 cut(s)	283, 364, 642
NlaIII	CATG	3 cut(s)	290, 307, 347
NlaIV	GGNNCC	3 cut(s)	66, 217, 366
NmeAIII	GCCGAG	1 cut(s)	430
NspI	RCATGY	2 cut(s)	307, 347
PaeR7I	CTCGAG	1 cut(s)	533
PaqCI	CACCTGC	1 cut(s)	614
PfeI	GAWTC	3 cut(s)	4, 70, 337
PinAI	ACCGGT	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	614
PspN4I	GGNNCC	3 cut(s)	66, 217, 366
PspPI	GGNCC	2 cut(s)	215, 472
PspXI	VCTCGAGB	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	3 cut(s)	259, 721, 740
RsaNI	GTAC	3 cut(s)	258, 720, 739
SaqAI	TTAA	3 cut(s)	318, 480, 552
Sau3AI	GATC	3 cut(s)	283, 364, 642
Sau96I	GGNCC	2 cut(s)	215, 472
ScaI	AGTACT	1 cut(s)	740
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	8 cut(s)	45, 334, 393, 451, 558, 628, 636, 691
SfaNI	GCATC	2 cut(s)	391, 423
SfcI	CTRYAG	1 cut(s)	504
Sfr274I	CTCGAG	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	533
SmlI	CTYRAG	3 cut(s)	317, 533, 708
SmoI	CTYRAG	3 cut(s)	317, 533, 708
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	4 cut(s)	369, 466, 514, 724
SsiI	CCGC	5 cut(s)	92, 98, 126, 243, 409
SspMI	CTAG	4 cut(s)	204, 261, 635, 742
TaaI	ACNGT	1 cut(s)	573
TaqI	TCGA	4 cut(s)	224, 234, 309, 534
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	4 cut(s)	369, 466, 514, 724
TatI	WGTACW	1 cut(s)	738
TfiI	GAWTC	3 cut(s)	4, 70, 337
Tru1I	TTAA	3 cut(s)	318, 480, 552
Tru9I	TTAA	3 cut(s)	318, 480, 552
TscAI	CASTG	1 cut(s)	285
TspDTI	ATGAA	4 cut(s)	17, 543, 548, 717
TspRI	CASTG	1 cut(s)	285
Vha464I	CTTAAG	1 cut(s)	317
XbaI	TCTAGA	1 cut(s)	203
XceI	RCATGY	2 cut(s)	307, 347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XhoI	CTCGAG	1 cut(s)	533
XspI	CTAG	4 cut(s)	204, 261, 635, 742
ZrmI	AGTACT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.