Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000565.1

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

76634 .. 82935

Gene Structure 6302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000565.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggagaggctgcagagaatgttcgccggtgccggaggagctttgggccacccgccgcccgactcccccaccctcgattcctccgagcaggtctacatctcctccttggcgctcctcaaaatgctcaagcacgggagagctggggttcctatggaggtcatgggattgatgctgggagagtttgtggatgaatacactgttcgtgttgttgacgtctttgcgatgccgcagagtggtactggtgtcagtgtcgaagccgtcgatcatgtctttcagactaatatgcttgatatgcttaagcagaccggacgaccagagatggtagttgggtggtaccattcgcatcctggatttggatgttggctatccggtgtggacattaatacccagcagagctttgaagctttgaatcaacgggctgtggctgtagtggtggatccaattcagagcgtgaaggggaagaccacatccaatctcgggcatctaaataagccatcaattcaagccttgatccatgggttaaatcgtcattattactccatagcaattaattaccggaagaatgaactcgaggagaaaatgttgcttaaccttcacaagaagaaatggacagatgggctgacactaaagcgatttgacactcattcaaaaacaaatgagcaaacagttcaggagatgttaaatctagccgttaaatacaacaaggcagtgcaggaggaggatgagctgccaccagagaagcttgcaattgcaaacgtgggaagacaagatgctaagaagcacctcgaagagcatgtctccaacttaatgtcctcaaacattgtccagaccttgggcacaatgcttgatactgtggtgttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

287

Amino Acids

31.99

Weight (kDa)

6.31

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	79
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	2 cut(s)	29, 333
AccB7I	CCANNNNNTGG	1 cut(s)	832
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	3 cut(s)	53, 56, 227
AclWI	GGATC	3 cut(s)	431, 444, 505
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	238, 335
AfiI	CCNNNNNNNGG	4 cut(s)	233, 353, 477, 832
AflII	CTTAAG	1 cut(s)	296
AgsI	TTSAA	4 cut(s)	401, 409, 503, 648
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	6 cut(s)	41, 140, 396, 404, 727, 742
AluI	AGCT	6 cut(s)	41, 140, 396, 404, 727, 742
Alw26I	GTCTC	1 cut(s)	802
AlwI	GGATC	3 cut(s)	431, 444, 505
Ama87I	CYCGRG	2 cut(s)	476, 569
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	10, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	780, 812
AseI	ATTAAT	2 cut(s)	381, 549
Asp718I	GGTACC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	46
AvaI	CYCGRG	2 cut(s)	476, 569
BaeGI	GKGCMC	1 cut(s)	839
BaeI	ACNNNNGTAYC	3 cut(s)	228, 261, 840
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	2 cut(s)	29, 333
BbsI	GAAGAC	2 cut(s)	467, 769
BbvI	GCAGC	1 cut(s)	714
BccI	CCATC	3 cut(s)	313, 502, 608
BceAI	ACGGC	2 cut(s)	242, 674
BciT130I	CCWGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	802
BfaI	CTAG	2 cut(s)	686, 862
BfmI	CTRYAG	2 cut(s)	11, 426
BfoI	RGCGCY	1 cut(s)	113
BfrI	CTTAAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	4 cut(s)	11, 56, 227, 728
BlsI	GCNGC	4 cut(s)	12, 57, 228, 729
Bme1390I	CCNGG	1 cut(s)	348
BmeT110I	CYCGRG	2 cut(s)	476, 569
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	4 cut(s)	31, 147, 335, 438
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	5 cut(s)	159, 213, 352, 490, 760
BpiI	GAAGAC	2 cut(s)	467, 769
BplI	GAGNNNNNCTC	2 cut(s)	782, 814
BpuEI	CTTGAG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	105, 514, 831
BsaWI	WCCGGW	3 cut(s)	305, 368, 555
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 168, 198, 566, 596
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 353, 477, 832
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	3 cut(s)	105, 514, 831
BseGI	GGATG	5 cut(s)	193, 343, 362, 467, 727
BseLI	CCNNNNNNNGG	4 cut(s)	233, 353, 477, 832
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	5 cut(s)	51, 91, 104, 587, 731
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	1 cut(s)	714
BseYI	CCCAGC	3 cut(s)	140, 172, 387
BsgI	GTGCAG	1 cut(s)	731
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	2 cut(s)	29, 333
BsiHKCI	CYCGRG	2 cut(s)	476, 569
BsiSI	CCGG	5 cut(s)	27, 33, 306, 369, 556
BslI	CCNNNNNNNGG	4 cut(s)	233, 353, 477, 832
BsmAI	GTCTC	1 cut(s)	802
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	2 cut(s)	476, 569
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp143I	GATC	3 cut(s)	262, 436, 510
Bsp19I	CCATGG	1 cut(s)	514
BspACI	CCGC	3 cut(s)	53, 56, 227
BspANI	GGCC	1 cut(s)	48
BspLI	GGNNCC	4 cut(s)	31, 147, 335, 438
BspMAI	CTGCAG	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	3 cut(s)	431, 444, 505
BspQI	GCTCTTC	1 cut(s)	783
BspT107I	GGYRCC	2 cut(s)	29, 333
BspTI	CTTAAG	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	105, 514, 831
BssMI	GATC	3 cut(s)	262, 436, 510
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	3 cut(s)	105, 514, 831
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	199, 667, 853
Bst6I	CTCTTC	1 cut(s)	783
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	744
BstDEI	CTNAG	1 cut(s)	774
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	5 cut(s)	193, 343, 362, 467, 727
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	265, 439, 513
BstMAI	GTCTC	1 cut(s)	802
BstMBI	GATC	3 cut(s)	262, 436, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 292
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	2 cut(s)	11, 426
BstSLI	GKGCMC	1 cut(s)	839
BstV1I	GCAGC	1 cut(s)	714
BstV2I	GAAGAC	2 cut(s)	467, 769
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	514
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	5 cut(s)	193, 343, 362, 467, 727
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	3 cut(s)	195, 253, 714
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	744
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	237, 334
CviAII	CATG	4 cut(s)	160, 266, 515, 794
CviQI	GTAC	2 cut(s)	237, 334
DdeI	CTNAG	1 cut(s)	774
DpnI	GATC	3 cut(s)	264, 438, 512
DpnII	GATC	3 cut(s)	262, 436, 510
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
Eco130I	CCWWGG	3 cut(s)	105, 514, 831
Eco88I	CYCGRG	2 cut(s)	476, 569
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	3 cut(s)	105, 514, 831
ErhI	CCWWGG	3 cut(s)	105, 514, 831
FaeI	CATG	4 cut(s)	163, 269, 518, 797
FaiI	YATR	8 cut(s)	152, 161, 267, 284, 293, 516, 542, 795
FatI	CATG	4 cut(s)	159, 265, 514, 793
FauI	CCCGC	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	11, 56, 227, 728
FokI	GGATG	5 cut(s)	200, 330, 369, 454, 734
Fsp4HI	GCNGC	4 cut(s)	11, 56, 227, 728
FspBI	CTAG	2 cut(s)	686, 862
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	4 cut(s)	11, 56, 227, 728
GsaI	CCCAGC	3 cut(s)	144, 176, 391
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	5 cut(s)	27, 33, 306, 369, 556
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	4 cut(s)	163, 269, 518, 797
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	2 cut(s)	402, 740
HinfI	GANTC	3 cut(s)	62, 77, 409
HpaII	CCGG	5 cut(s)	27, 33, 306, 369, 556
Hpy166II	GTNNAC	3 cut(s)	94, 211, 376
Hpy188I	TCNGA	3 cut(s)	85, 276, 447
Hpy188III	TCNNGA	2 cut(s)	671, 826
Hpy8I	GTNNAC	3 cut(s)	94, 211, 376
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	448, 602
HpyCH4III	ACNGT	3 cut(s)	199, 667, 853
HpyCH4IV	ACGT	2 cut(s)	213, 756
HpyCH4V	TGCA	4 cut(s)	13, 712, 746, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 292
HpyF3I	CTNAG	1 cut(s)	774
HpySE526I	ACGT	2 cut(s)	213, 756
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	163, 269, 518, 797
HspAI	GCGC	1 cut(s)	110
KpnI	GGTACC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	262, 436, 510
LguI	GCTCTTC	1 cut(s)	783
LmnI	GCTCC	2 cut(s)	38, 117
Lsp1109I	GCAGC	1 cut(s)	714
LweI	GCATC	5 cut(s)	159, 213, 352, 490, 760
MaeI	CTAG	2 cut(s)	686, 862
MaeII	ACGT	2 cut(s)	213, 756
MalI	GATC	3 cut(s)	264, 438, 512
MboI	GATC	3 cut(s)	262, 436, 510
MboII	GAAGA	5 cut(s)	472, 571, 613, 774, 800
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	839
MluCI	AATT	5 cut(s)	441, 498, 546, 550, 747
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	825
MseI	TTAA	8 cut(s)	297, 381, 521, 549, 588, 680, 693, 806
MspCI	CTTAAG	1 cut(s)	296
MspI	CCGG	5 cut(s)	27, 33, 306, 369, 556
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	38, 292
NcoI	CCATGG	1 cut(s)	514
NdeII	GATC	3 cut(s)	262, 436, 510
NlaIII	CATG	4 cut(s)	163, 269, 518, 797
NlaIV	GGNNCC	4 cut(s)	31, 147, 335, 438
NspI	RCATGY	1 cut(s)	797
PaeR7I	CTCGAG	1 cut(s)	569
PciSI	GCTCTTC	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 258
PfeI	GAWTC	2 cut(s)	77, 409
PflMI	CCANNNNNTGG	1 cut(s)	832
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	4 cut(s)	12, 57, 228, 729
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PshBI	ATTAAT	2 cut(s)	381, 549
Psp6I	CCWGG	1 cut(s)	346
PspFI	CCCAGC	3 cut(s)	140, 172, 387
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	4 cut(s)	31, 147, 335, 438
PspPI	GGNCC	1 cut(s)	46
PspXI	VCTCGAGB	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	2 cut(s)	238, 335
RsaNI	GTAC	2 cut(s)	237, 334
SapI	GCTCTTC	1 cut(s)	783
SaqAI	TTAA	8 cut(s)	297, 381, 521, 549, 588, 680, 693, 806
SatI	GCNGC	4 cut(s)	11, 56, 227, 728
Sau3AI	GATC	3 cut(s)	262, 436, 510
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	839
SfaNI	GCATC	5 cut(s)	159, 213, 352, 490, 760
SfcI	CTRYAG	2 cut(s)	11, 426
Sfr274I	CTCGAG	1 cut(s)	569
SgrAI	CRCCGGYG	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	569
SmlI	CTYRAG	3 cut(s)	125, 296, 569
SmoI	CTYRAG	3 cut(s)	125, 296, 569
Sse9I	AATT	5 cut(s)	441, 498, 546, 550, 747
SsiI	CCGC	3 cut(s)	53, 56, 227
SspMI	CTAG	2 cut(s)	686, 862
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	3 cut(s)	105, 514, 831
TaaI	ACNGT	3 cut(s)	199, 667, 853
TaiI	ACGT	2 cut(s)	216, 759
TaqI	TCGA	5 cut(s)	75, 252, 261, 570, 786
TasI	AATT	5 cut(s)	441, 498, 546, 550, 747
TauI	GCSGC	2 cut(s)	58, 229
TfiI	GAWTC	2 cut(s)	77, 409
Tru1I	TTAA	8 cut(s)	297, 381, 521, 549, 588, 680, 693, 806
Tru9I	TTAA	8 cut(s)	297, 381, 521, 549, 588, 680, 693, 806
TscAI	CASTG	3 cut(s)	202, 253, 714
TseI	GCWGC	2 cut(s)	10, 727
TspDTI	ATGAA	2 cut(s)	204, 579
TspRI	CASTG	3 cut(s)	202, 253, 714
Van91I	CCANNNNNTGG	1 cut(s)	832
Vha464I	CTTAAG	1 cut(s)	296
VspI	ATTAAT	2 cut(s)	381, 549
XceI	RCATGY	1 cut(s)	797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	686, 862
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.