RLG00000000567

26S proteasome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001418
Physical Location & Seq
Reverse (-)
2061540 .. 2062360
821 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000567

Sequence Viewer

Length: 429 bp
ATGCTCAAGCATGGAAGAACCGGGGTTCCTATGGAGGTCATGGGATTGATGATCGGTGAGTTCGTGGACGATTACACAGTTTGTGTGGTTGATGTCTTTGCAATGCCGCAGAACGGAAGAATGAACTTGTTCGAGGAGAAGATGTTGCTTAGTCTTCATAAGAAGAATTGGGCAGATGGGCTAACACTTAAGCATTTTGATACTCATTCAAAGACAAATGAGCAAACTGTTAAGGAAATGTTAACCCTAGCTGTGAAGTACAACGAGGCGGTGCATGAGGAGGATGGGCTGACATCAGAGAAGCTTGCCATTGCAAATGTGGGAAGACCAGACGCCAAGAAGCGGCTCGAAGAGCGTGTCTCGAACTTGATGTCCTCGAACATTGTCCAAGGTTCCAAACCTTGGGCAGTGGTGGATCCAGGATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
JAB MitMem_reg

Protein Analysis

143

Amino Acids

15.9

Weight (kDa)

5.94

Isoelectric Point (pI)

24.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 1 - 42 1.5e-06 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
RPN11_C PF23594 60 - 130 2.4e-25 26S proteasome regulatory subunit RPN11 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 402
AciI CCGC 3 cut(s) 107, 269, 343
AclWI GGATC 3 cut(s) 410, 417, 423
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 3 cut(s) 113, 342, 402
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 210
AjnI CCWGG 1 cut(s) 418
AloI GAACNNNNNNTCC 4 cut(s) 10, 42, 356, 388
AluBI AGCT 2 cut(s) 251, 304
AluI AGCT 2 cut(s) 251, 304
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 3 cut(s) 410, 417, 423
ArsI GACNNNNNNTTYG 4 cut(s) 342, 356, 374, 388
Asp700I GAANNNNTTC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 68
BamHI GGATCC 2 cut(s) 415, 422
BbsI GAAGAC 2 cut(s) 146, 331
BccI CCATC 2 cut(s) 170, 278
BciT130I CCWGG 1 cut(s) 420
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 2 cut(s) 248, 427
BfrI CTTAAG 1 cut(s) 188
BisI GCNGC 2 cut(s) 107, 344
BlsI GCNGC 2 cut(s) 108, 345
Bme1390I CCNGG 2 cut(s) 22, 420
BmiI GGNNCC 4 cut(s) 27, 394, 417, 424
BmrFI CCNGG 2 cut(s) 22, 420
BpiI GAAGAC 2 cut(s) 146, 331
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpuMI CCSGG 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 3 cut(s) 21, 388, 401
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 342, 402
Bse3DI GCAATG 2 cut(s) 108, 309
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 21, 388, 401
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 113, 342, 402
BseMI GCAATG 2 cut(s) 108, 309
BseRI GAGGAG 2 cut(s) 149, 293
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 3 cut(s) 113, 342, 402
BsmAI GTCTC 1 cut(s) 364
Bsp143I GATC 3 cut(s) 51, 415, 422
BspACI CCGC 3 cut(s) 107, 269, 343
BspLI GGNNCC 4 cut(s) 27, 394, 417, 424
BspPI GGATC 3 cut(s) 410, 417, 423
BspQI GCTCTTC 1 cut(s) 345
BspTI CTTAAG 1 cut(s) 188
BsrDI GCAATG 2 cut(s) 108, 309
BssECI CCNNGG 3 cut(s) 21, 388, 401
BssMI GATC 3 cut(s) 51, 415, 422
BssNI GRCGYC 1 cut(s) 333
BssT1I CCWWGG 2 cut(s) 388, 401
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 79, 229
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 333
BstAFI CTTAAG 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 3 cut(s) 54, 418, 425
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 3 cut(s) 51, 415, 422
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 2 cut(s) 20, 418
BstV2I GAAGAC 2 cut(s) 146, 331
BstX2I RGATCY 2 cut(s) 415, 422
BstYI RGATCY 2 cut(s) 415, 422
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 306
CseI GACGC 1 cut(s) 341
Csp6I GTAC 1 cut(s) 259
CviAII CATG 3 cut(s) 11, 40, 275
CviJI RGCY 5 cut(s) 181, 251, 289, 304, 346
CviKI_1 RGCY 5 cut(s) 181, 251, 289, 304, 346
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 149
DpnI GATC 3 cut(s) 53, 417, 424
DpnII GATC 3 cut(s) 51, 415, 422
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 2 cut(s) 388, 401
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 388, 401
ErhI CCWWGG 2 cut(s) 388, 401
FaeI CATG 3 cut(s) 14, 43, 278
FaiI YATR 5 cut(s) 12, 32, 41, 159, 276
FatI CATG 3 cut(s) 10, 39, 274
Fnu4HI GCNGC 2 cut(s) 107, 344
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 2 cut(s) 107, 344
FspBI CTAG 2 cut(s) 248, 427
GluI GCNGC 2 cut(s) 107, 344
HapII CCGG 1 cut(s) 21
HgaI GACGC 1 cut(s) 341
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 3 cut(s) 14, 43, 278
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 302
HpaI GTTAAC 1 cut(s) 243
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 67, 243
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 2 cut(s) 67, 243
HpyCH4III ACNGT 2 cut(s) 79, 229
HpyCH4V TGCA 3 cut(s) 101, 274, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpyF3I CTNAG 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 3 cut(s) 14, 43, 278
KspAI GTTAAC 1 cut(s) 243
Kzo9I GATC 3 cut(s) 51, 415, 422
LguI GCTCTTC 1 cut(s) 345
LpnPI CCDG 3 cut(s) 34, 342, 405
MaeI CTAG 2 cut(s) 248, 427
MalI GATC 3 cut(s) 53, 417, 424
MboI GATC 3 cut(s) 51, 415, 422
MboII GAAGA 7 cut(s) 27, 129, 146, 151, 175, 336, 362
MflI RGATCY 2 cut(s) 415, 422
MluCI AATT 1 cut(s) 166
MnlI CCTC 6 cut(s) 28, 127, 259, 271, 274, 385
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 3 cut(s) 189, 231, 242
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 22, 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 352
NciI CCSGG 1 cut(s) 22
NdeII GATC 3 cut(s) 51, 415, 422
NlaIII CATG 3 cut(s) 14, 43, 278
NlaIV GGNNCC 4 cut(s) 27, 394, 417, 424
PciSI GCTCTTC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 402
PfoI TCCNGGA 1 cut(s) 418
PkrI GCNGC 2 cut(s) 108, 345
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 4 cut(s) 27, 394, 417, 424
PsuI RGATCY 2 cut(s) 415, 422
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 189, 231, 242
SatI GCNGC 2 cut(s) 107, 344
Sau3AI GATC 3 cut(s) 51, 415, 422
ScrFI CCNGG 2 cut(s) 22, 420
SetI ASST 5 cut(s) 39, 253, 306, 394, 403
SmlI CTYRAG 2 cut(s) 5, 188
SmoI CTYRAG 2 cut(s) 5, 188
Sse9I AATT 1 cut(s) 166
SsiI CCGC 3 cut(s) 107, 269, 343
SspMI CTAG 2 cut(s) 248, 427
StyD4I CCNGG 2 cut(s) 20, 418
StyI CCWWGG 2 cut(s) 388, 401
TaaI ACNGT 2 cut(s) 79, 229
TaqI TCGA 4 cut(s) 132, 348, 362, 377
TasI AATT 1 cut(s) 166
TatI WGTACW 1 cut(s) 258
TauI GCSGC 2 cut(s) 109, 346
Tru1I TTAA 3 cut(s) 189, 231, 242
Tru9I TTAA 3 cut(s) 189, 231, 242
TscAI CASTG 1 cut(s) 414
TspDTI ATGAA 2 cut(s) 137, 146
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 1 cut(s) 414
Van91I CCANNNNNTGG 1 cut(s) 402
Vha464I CTTAAG 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 248, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.