Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

25286459 .. 25308254

Gene Structure 21796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG273300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGAAATGTGTCCTAATCCAGATTGGCACCGGACTATTCACTGCCCTAACCTCACTCCTAAGCTTTGAAGCTTTGAATCAACATGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGAGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGATGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTGGGCCATCTTAATAAACCATCTATTCAAACCCTCAATTGGACAAAGGTTTCATTCAATCGAATCAATGATTTACCAAATTACGATACACGAACACCCAAGCGGGTATCTGATACCATGAGGGTTTGGATGAGAGACACCTTAATGATCACGTGTACTTATTGCAGTGAGAAACTCTCTTCAAAGAATGAGGAGTTCACTGGGAAGACTCCAAATGCCAAAGGTCGTGACACTGGAAACTGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

152

Amino Acids

17.12

Weight (kDa)

9.35

Isoelectric Point (pI)

19.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AciI	CCGC	2 cut(s)	151, 313
AclWI	GGATC	2 cut(s)	101, 114
AcvI	CACGTG	1 cut(s)	363
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	249
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	5 cut(s)	71, 79, 239, 268, 393
AluBI	AGCT	2 cut(s)	66, 74
AluI	AGCT	2 cut(s)	66, 74
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	2 cut(s)	101, 114
AoxI	GGCC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	214
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	29
BbrPI	CACGTG	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	422
BccI	CCATC	2 cut(s)	225, 238
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	31, 108
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	2 cut(s)	133, 165
BmuI	ACTGGG	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	422
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
Bpu10I	CCTNAGC	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	415, 448
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	2 cut(s)	203, 345
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	415, 448
BseRI	GAGGAG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	106, 357
BspACI	CCGC	2 cut(s)	151, 313
BspANI	GGCC	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	31, 108
BspPI	GGATC	2 cut(s)	101, 114
BspT107I	GGYRCC	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	415, 448
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	2 cut(s)	106, 357
Bst6I	CTCTTC	2 cut(s)	119, 394
BstBAI	YACGTR	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	203, 345
BstKTI	GATC	2 cut(s)	109, 360
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	2 cut(s)	106, 357
BstNSI	RCATGY	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	203, 345
BtsI	GCAGTG	2 cut(s)	42, 382
BtsIMutI	CAGTG	4 cut(s)	42, 382, 408, 441
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	2 cut(s)	86, 328
CviJI	RGCY	3 cut(s)	66, 74, 216
CviKI_1	RGCY	3 cut(s)	66, 74, 216
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	2 cut(s)	108, 359
DpnII	GATC	2 cut(s)	106, 357
Eam1104I	CTCTTC	2 cut(s)	119, 394
EarI	CTCTTC	2 cut(s)	119, 394
EciI	GGCGGA	1 cut(s)	140
Eco72I	CACGTG	1 cut(s)	363
FaeI	CATG	2 cut(s)	89, 331
FaiI	YATR	3 cut(s)	87, 173, 329
FatI	CATG	2 cut(s)	85, 327
FauI	CCCGC	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	357
FokI	GGATG	2 cut(s)	190, 352
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	2 cut(s)	89, 331
HindIII	AAGCTT	2 cut(s)	64, 72
HinfI	GANTC	3 cut(s)	79, 273, 418
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	2 cut(s)	366, 408
Hpy188I	TCNGA	2 cut(s)	117, 322
Hpy188III	TCNNGA	3 cut(s)	22, 185, 437
Hpy8I	GTNNAC	2 cut(s)	366, 408
HpyAV	CCTTC	2 cut(s)	124, 157
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	1 cut(s)	375
HpyF3I	CTNAG	1 cut(s)	62
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	2 cut(s)	89, 331
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	106, 357
LpnPI	CCDG	5 cut(s)	35, 46, 197, 396, 429
LweI	GCATC	2 cut(s)	133, 165
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	2 cut(s)	108, 359
MboI	GATC	2 cut(s)	106, 357
MboII	GAAGA	3 cut(s)	136, 381, 427
MfeI	CAATTG	1 cut(s)	247
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	3 cut(s)	111, 247, 289
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	6 cut(s)	64, 120, 201, 254, 324, 394
MseI	TTAA	2 cut(s)	222, 353
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	247
NdeII	GATC	2 cut(s)	106, 357
NlaIII	CATG	2 cut(s)	89, 331
NlaIV	GGNNCC	2 cut(s)	31, 108
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	79, 273
PleI	GAGTC	1 cut(s)	412
PmaCI	CACGTG	1 cut(s)	363
PmlI	CACGTG	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	363
PspCI	CACGTG	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	31, 108
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	222, 353
Sau3AI	GATC	2 cut(s)	106, 357
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	412
SetI	ASST	9 cut(s)	56, 68, 76, 135, 193, 261, 353, 365, 436
SfaNI	GCATC	2 cut(s)	133, 165
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	111, 247, 289
SsiI	CCGC	2 cut(s)	151, 313
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	1 cut(s)	271
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	3 cut(s)	111, 247, 289
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	79, 273
Tru1I	TTAA	2 cut(s)	222, 353
Tru9I	TTAA	2 cut(s)	222, 353
TscAI	CASTG	4 cut(s)	49, 382, 415, 448
TseFI	GTSAC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	4 cut(s)	49, 382, 415, 448
XceI	RCATGY	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.