Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

63807837 .. 63812475

Gene Structure 4639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG409100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTGGATGTTCTAGAGTTCAAGGCCCCCGTTTCGGAGACGAATCGGAGCAATTGCAAAAGAAGTGCGCTTCGTGTTTCCGAGAGTGGTACTGGTGTTAGTGTTGAAGCAGTGGATCATATGTTCCAGACTAACATGCTCGATATGCTTAAGCAGATTGGAAGACCGGAGATGGTTGTAGGGTGGTACCATTCGCATCCTAGATTTGGCTGTTGGCTATCTGGTGTAGACATTAATACACAGCAGAGCTTTAAAGCTTTGAATCAACATGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGAGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGATGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTGGGCCATCTTAATAAACCATCTATTCAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

143

Amino Acids

16.05

Weight (kDa)

7.86

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	23 - 89	1e-18	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	3 cut(s)	123, 284, 297
AfaI	GTAC	2 cut(s)	91, 188
AfiI	CCNNNNNNNGG	2 cut(s)	34, 206
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	22, 107, 262, 422
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	2 cut(s)	249, 257
AluI	AGCT	2 cut(s)	249, 257
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	3 cut(s)	123, 284, 297
AoxI	GGCC	2 cut(s)	24, 397
AseI	ATTAAT	1 cut(s)	234
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	25, 397
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BamHI	GGATCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	169
BccI	CCATC	3 cut(s)	166, 408, 421
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	14, 201
BfrI	CTTAAG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	25, 397
BmiI	GGNNCC	3 cut(s)	27, 188, 291
BmsI	GCATC	3 cut(s)	205, 316, 348
BpiI	GAAGAC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 206
Bse1I	ACTGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	3 cut(s)	13, 196, 386
BseLI	CCNNNNNNNGG	2 cut(s)	34, 206
BseNI	ACTGG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	26, 399
BshNI	GGYRCC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	34, 206
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	26, 399
Bsp143I	GATC	2 cut(s)	115, 289
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	2 cut(s)	26, 399
BspLI	GGNNCC	3 cut(s)	27, 188, 291
BspPI	GGATC	3 cut(s)	123, 284, 297
BspT107I	GGYRCC	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	2 cut(s)	115, 289
Bst6I	CTCTTC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	13, 196, 386
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	118, 292
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	2 cut(s)	115, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNSI	RCATGY	2 cut(s)	139, 272
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	26, 399
BtsCI	GGATG	3 cut(s)	13, 196, 386
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	25, 397
Csp6I	GTAC	2 cut(s)	90, 187
CviAII	CATG	2 cut(s)	136, 269
CviJI	RGCY	6 cut(s)	26, 210, 217, 249, 257, 399
CviKI_1	RGCY	6 cut(s)	26, 210, 217, 249, 257, 399
CviQI	GTAC	2 cut(s)	90, 187
DpnI	GATC	2 cut(s)	117, 291
DpnII	GATC	2 cut(s)	115, 289
DraI	TTTAAA	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	139, 272
FaiI	YATR	6 cut(s)	120, 122, 137, 146, 270, 356
FatI	CATG	2 cut(s)	135, 268
FauNDI	CATATG	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	228
FokI	GGATG	3 cut(s)	20, 183, 373
FspBI	CTAG	2 cut(s)	14, 201
GlaI	GCGC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	26, 399
HapII	CCGG	1 cut(s)	167
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	139, 272
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	2 cut(s)	43, 262
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	4 cut(s)	37, 48, 82, 300
Hpy188III	TCNNGA	4 cut(s)	14, 127, 368, 422
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	307, 340
HpyCH4V	TGCA	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	139, 272
HspAI	GCGC	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	115, 289
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	5 cut(s)	78, 140, 180, 207, 380
LweI	GCATC	3 cut(s)	205, 316, 348
MaeI	CTAG	2 cut(s)	14, 201
MalI	GATC	2 cut(s)	117, 291
MboI	GATC	2 cut(s)	115, 289
MboII	GAAGA	2 cut(s)	174, 319
MfeI	CAATTG	1 cut(s)	52
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	2 cut(s)	52, 294
MnlI	CCTC	2 cut(s)	303, 384
MseI	TTAA	4 cut(s)	150, 234, 252, 405
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeI	CATATG	1 cut(s)	120
NdeII	GATC	2 cut(s)	115, 289
NlaIII	CATG	2 cut(s)	139, 272
NlaIV	GGNNCC	3 cut(s)	27, 188, 291
NmeAIII	GCCGAG	1 cut(s)	355
NspI	RCATGY	2 cut(s)	139, 272
PfeI	GAWTC	2 cut(s)	43, 262
PshBI	ATTAAT	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	27, 188, 291
PspPI	GGNCC	2 cut(s)	25, 397
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	2 cut(s)	91, 188
RsaNI	GTAC	2 cut(s)	90, 187
SaqAI	TTAA	4 cut(s)	150, 234, 252, 405
Sau3AI	GATC	2 cut(s)	115, 289
Sau96I	GGNCC	2 cut(s)	25, 397
SetI	ASST	4 cut(s)	251, 259, 318, 376
SfaNI	GCATC	3 cut(s)	205, 316, 348
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	52, 294
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	2 cut(s)	14, 201
TaqI	TCGA	1 cut(s)	141
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	2 cut(s)	52, 294
TfiI	GAWTC	2 cut(s)	43, 262
Tru1I	TTAA	4 cut(s)	150, 234, 252, 405
Tru9I	TTAA	4 cut(s)	150, 234, 252, 405
TscAI	CASTG	1 cut(s)	117
TspRI	CASTG	1 cut(s)	117
Vha464I	CTTAAG	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	234
XbaI	TCTAGA	1 cut(s)	13
XceI	RCATGY	2 cut(s)	139, 272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	2 cut(s)	14, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.