Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

3862957 .. 3866081

Gene Structure 3125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCAGGGATGGAGAGGCTACAGAGGATGTTCGCCGGCGCCGGAGGAGCATTGGGCCACCCACCCCCCGATTCGCCCACTCTCGATTCTTCAGAGCAGGTCTACATCTCGTCACTCGCGCTGTTGAAGATGCTCAAGCACGGAAGAGCGGGGGTTCCTATGGAGGTCATGGGCTTGATGCTGGGAGAGTTTGTGGATGAGTACACTGTTCGAGTTGTCGATGTCTTTGCTATGCCGCAGAGTGGTACTGGTGTTAGTGTCGAAGCAGTCGATCATGTGTTCCAGACTAACATGCTCGATATGCTTAAGCAGACTGGAAGACCGGAGATGGTTGTAGGGTGGTACCATTCGCATCCTGGATTTGGCTGTTGGCTATCTGGTGTGGACATTAATACGCAGCAGAGCTTTGAAGCTTTGAATCAACGGGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGGGGAAGGTAGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGATGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTTGGCCATCTTAATAAACCATCTATTCAAGCTTTGATCCATGGGTTAAACCGGCATTATTACTCTATAGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTAACCTTCATAAGAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTGATACTCATTCAAAAACAAATGAGCAAACTGTTCAGGAGATGTTGAGCTTAGCTGTCAAATACAACAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAGAGAAACTTGCAATTGCAATGTGGGAAGACAAGATGCCAAGAAGCACCTTGAAGAGCATGTCTCCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

293

Amino Acids

32.78

Weight (kDa)

6.56

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	30 - 141	7.9e-35	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB	PF14464	41 - 131	1.4e-06	Prokaryotic homologs of the JAB domain
RPN11_C	PF23594	231 - 276	8.6e-15	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	2 cut(s)	38, 342
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	119
AciI	CCGC	3 cut(s)	149, 236, 490
AclWI	GGATC	3 cut(s)	440, 453, 580
AcoI	YGGCCR	1 cut(s)	553
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	3 cut(s)	203, 247, 344
AfiI	CCNNNNNNNGG	2 cut(s)	242, 362
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	6 cut(s)	127, 410, 418, 578, 723, 862
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	5 cut(s)	405, 413, 581, 759, 764
AluI	AGCT	5 cut(s)	405, 413, 581, 759, 764
Alw26I	GTCTC	1 cut(s)	876
AlwI	GGATC	3 cut(s)	440, 453, 580
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	3 cut(s)	55, 553, 780
ApeKI	GCWGC	1 cut(s)	397
AseI	ATTAAT	1 cut(s)	390
Asp718I	GGTACC	1 cut(s)	342
AspLEI	GCGC	2 cut(s)	41, 121
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	798
AvaI	CYCGRG	1 cut(s)	644
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BalI	TGGCCA	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	2 cut(s)	38, 342
BbsI	GAAGAC	2 cut(s)	325, 843
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	5 cut(s)	4, 322, 564, 577, 683
BceAI	ACGGC	1 cut(s)	767
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	876
BfmI	CTRYAG	2 cut(s)	20, 615
BfoI	RGCGCY	1 cut(s)	42
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	236, 398
BlpI	GCTNAGC	1 cut(s)	760
BlsI	GCNGC	2 cut(s)	237, 399
Bme1390I	CCNGG	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	40, 156, 344, 447
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	6 cut(s)	120, 168, 361, 472, 504, 834
BpiI	GAAGAC	2 cut(s)	325, 843
BplI	GAGNNNNNCTC	1 cut(s)	856
Bpu1102I	GCTNAGC	1 cut(s)	760
BpuEI	CTTGAG	2 cut(s)	119, 686
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	530, 589
BsaWI	WCCGGW	1 cut(s)	322
BsaXI	ACNNNNNCTCC	6 cut(s)	177, 207, 641, 671, 785, 815
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 362
Bse118I	RCCGGY	2 cut(s)	35, 600
Bse1I	ACTGG	2 cut(s)	253, 319
Bse3DI	GCAATG	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	530, 589
BseGI	GGATG	6 cut(s)	15, 33, 202, 352, 542, 802
BseLI	CCNNNNNNNGG	2 cut(s)	242, 362
BseMI	GCAATG	1 cut(s)	834
BseNI	ACTGG	2 cut(s)	253, 319
BseRI	GAGGAG	3 cut(s)	60, 662, 806
BseXI	GCAGC	1 cut(s)	409
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	806
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	57, 555, 782
BshNI	GGYRCC	2 cut(s)	38, 342
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	4 cut(s)	36, 42, 323, 601
BslI	CCNNNNNNNGG	2 cut(s)	242, 362
BsmAI	GTCTC	1 cut(s)	876
BsnI	GGCC	3 cut(s)	57, 555, 782
BsoBI	CYCGRG	1 cut(s)	644
Bsp143I	GATC	3 cut(s)	271, 445, 585
Bsp1720I	GCTNAGC	1 cut(s)	760
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	3 cut(s)	149, 236, 490
BspANI	GGCC	3 cut(s)	57, 555, 782
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	4 cut(s)	40, 156, 344, 447
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	440, 453, 580
BspQI	GCTCTTC	2 cut(s)	139, 857
BspT107I	GGYRCC	2 cut(s)	38, 342
BspTI	CTTAAG	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	2 cut(s)	35, 600
BsrI	ACTGG	2 cut(s)	253, 319
BssAI	RCCGGY	2 cut(s)	35, 600
BssECI	CCNNGG	2 cut(s)	530, 589
BssMI	GATC	3 cut(s)	271, 445, 585
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	208, 742
Bst6I	CTCTTC	2 cut(s)	139, 857
BstACI	GRCGYC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	760
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	6 cut(s)	15, 33, 202, 352, 542, 802
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 121
BstKTI	GATC	3 cut(s)	274, 448, 588
BstMAI	GTCTC	1 cut(s)	876
BstMBI	GATC	3 cut(s)	271, 445, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 301
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	2 cut(s)	295, 871
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	2 cut(s)	20, 615
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	2 cut(s)	325, 843
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	57, 555, 782
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	6 cut(s)	15, 33, 202, 352, 542, 802
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	2 cut(s)	41, 121
Cfr10I	RCCGGY	2 cut(s)	35, 600
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	3 cut(s)	202, 246, 343
CviAII	CATG	5 cut(s)	169, 275, 292, 590, 868
CviQI	GTAC	3 cut(s)	202, 246, 343
DdeI	CTNAG	1 cut(s)	760
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	3 cut(s)	273, 447, 587
DpnII	GATC	3 cut(s)	271, 445, 585
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	2 cut(s)	139, 857
EarI	CTCTTC	2 cut(s)	139, 857
EciI	GGCGGA	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	589
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	5 cut(s)	172, 278, 295, 593, 871
FatI	CATG	5 cut(s)	168, 274, 291, 589, 867
FauI	CCCGC	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	236, 398
FokI	GGATG	6 cut(s)	22, 40, 209, 339, 529, 809
Fsp4HI	GCNGC	2 cut(s)	236, 398
GlaI	GCGC	2 cut(s)	40, 120
GluI	GCNGC	2 cut(s)	236, 398
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	57, 555, 782
HapII	CCGG	4 cut(s)	36, 42, 323, 601
HhaI	GCGC	2 cut(s)	41, 121
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	172, 278, 295, 593, 871
Hin6I	GCGC	2 cut(s)	39, 119
HinP1I	GCGC	2 cut(s)	39, 119
HindIII	AAGCTT	2 cut(s)	411, 579
HinfI	GANTC	3 cut(s)	71, 86, 418
HpaII	CCGG	4 cut(s)	36, 42, 323, 601
HphI	GGTGA	1 cut(s)	798
Hpy166II	GTNNAC	3 cut(s)	103, 204, 385
Hpy188I	TCNGA	2 cut(s)	94, 456
Hpy188III	TCNNGA	4 cut(s)	83, 283, 524, 746
Hpy8I	GTNNAC	3 cut(s)	103, 204, 385
HpyAV	CCTTC	4 cut(s)	457, 463, 496, 677
HpyCH4III	ACNGT	2 cut(s)	208, 742
HpyCH4V	TGCA	3 cut(s)	787, 821, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 301
HpyF3I	CTNAG	1 cut(s)	760
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	172, 278, 295, 593, 871
HspAI	GCGC	2 cut(s)	39, 119
KasI	GGCGCC	1 cut(s)	38
KpnI	GGTACC	1 cut(s)	346
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	271, 445, 585
LguI	GCTCTTC	2 cut(s)	139, 857
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	6 cut(s)	120, 168, 361, 472, 504, 834
MaeIII	GTNAC	2 cut(s)	111, 804
MalI	GATC	3 cut(s)	273, 447, 587
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	3 cut(s)	271, 445, 585
MboII	GAAGA	9 cut(s)	81, 139, 156, 330, 646, 664, 688, 848, 874
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	3 cut(s)	450, 625, 822
MluNI	TGGCCA	1 cut(s)	555
Mly113I	GGCGCC	1 cut(s)	39
MnlI	CCTC	9 cut(s)	9, 18, 38, 157, 540, 640, 710, 784, 787
Mox20I	TGGCCA	1 cut(s)	555
MreI	CGCCGGCG	1 cut(s)	35
MroNI	GCCGGC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	6 cut(s)	306, 390, 561, 596, 663, 880
Msp20I	TGGCCA	1 cut(s)	555
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	4 cut(s)	36, 42, 323, 601
MspR9I	CCNGG	1 cut(s)	357
MunI	CAATTG	1 cut(s)	822
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	47, 301
NaeI	GCCGGC	1 cut(s)	37
NarI	GGCGCC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	271, 445, 585
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	5 cut(s)	172, 278, 295, 593, 871
NlaIV	GGNNCC	4 cut(s)	40, 156, 344, 447
NmeAIII	GCCGAG	1 cut(s)	511
NmuCI	GTSAC	2 cut(s)	111, 804
NspI	RCATGY	2 cut(s)	295, 871
PaeR7I	CTCGAG	1 cut(s)	644
PciSI	GCTCTTC	2 cut(s)	139, 857
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	71, 86, 418
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	237, 399
PluTI	GGCGCC	1 cut(s)	42
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	4 cut(s)	40, 156, 344, 447
PspPI	GGNCC	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	3 cut(s)	203, 247, 344
RsaNI	GTAC	3 cut(s)	202, 246, 343
SapI	GCTCTTC	2 cut(s)	139, 857
SaqAI	TTAA	6 cut(s)	306, 390, 561, 596, 663, 880
SatI	GCNGC	2 cut(s)	236, 398
Sau3AI	GATC	3 cut(s)	271, 445, 585
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	357
SfaNI	GCATC	6 cut(s)	120, 168, 361, 472, 504, 834
SfcI	CTRYAG	2 cut(s)	20, 615
SfoI	GGCGCC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	644
SgrAI	CRCCGGYG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	644
SmlI	CTYRAG	4 cut(s)	134, 305, 644, 701
SmoI	CTYRAG	4 cut(s)	134, 305, 644, 701
Sse9I	AATT	3 cut(s)	450, 625, 822
SsiI	CCGC	3 cut(s)	149, 236, 490
SspDI	GGCGCC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	208, 742
TaqI	TCGA	7 cut(s)	84, 211, 219, 261, 270, 297, 645
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	3 cut(s)	450, 625, 822
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	3 cut(s)	71, 86, 418
Tru1I	TTAA	6 cut(s)	306, 390, 561, 596, 663, 880
Tru9I	TTAA	6 cut(s)	306, 390, 561, 596, 663, 880
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	2 cut(s)	111, 804
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	2 cut(s)	111, 804
TspDTI	ATGAA	2 cut(s)	654, 659
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	390
XceI	RCATGY	2 cut(s)	295, 871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.