RchiOBHm_Chr7g0241561

26s proteasome non-ATPase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001418
Physical Location & Seq
Forward (+)
67641050 .. 67641241
192 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21646

Sequence Viewer

Length: 192 bp
ATGTTAACCCTAGCTGTGAAGTACAACGAGGCGGTGCATGAGGAGGATGGGCTGACATCAGAGAAGCTTGCCATTGCAAATGTGGGAAGACCAGACGCCAAGAAGCGGCTCGAAGAGCGTGTCTCGAACTTGATGTCCTCGAACATTGTCCAAGGTTCCAAACCTTGGGCAGTGGTGGATCCAGGATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
JAB MitMem_reg

Protein Analysis

63

Amino Acids

6.85

Weight (kDa)

5.7

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN11_C PF23594 1 - 51 3.3e-17 26S proteasome regulatory subunit RPN11 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 165
AciI CCGC 2 cut(s) 32, 106
AclWI GGATC 3 cut(s) 173, 180, 186
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 105, 165
AjnI CCWGG 1 cut(s) 181
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 2 cut(s) 14, 67
AluI AGCT 2 cut(s) 14, 67
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 3 cut(s) 173, 180, 186
ArsI GACNNNNNNTTYG 4 cut(s) 105, 119, 137, 151
BamHI GGATCC 2 cut(s) 178, 185
BbsI GAAGAC 1 cut(s) 94
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 2 cut(s) 11, 190
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 183
BmiI GGNNCC 3 cut(s) 157, 180, 187
BmrFI CCNGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 94
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 151, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 165
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 151, 164
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 2 cut(s) 105, 165
BseMI GCAATG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 105, 165
BsmAI GTCTC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 178, 185
BspACI CCGC 2 cut(s) 32, 106
BspLI GGNNCC 3 cut(s) 157, 180, 187
BspPI GGATC 3 cut(s) 173, 180, 186
BspQI GCTCTTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 151, 164
BssMI GATC 2 cut(s) 178, 185
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 151, 164
Bst2UI CCWGG 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 69
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 2 cut(s) 181, 188
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 2 cut(s) 178, 185
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 2 cut(s) 178, 185
BstYI RGATCY 2 cut(s) 178, 185
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 69
CseI GACGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 38
CviJI RGCY 4 cut(s) 14, 52, 67, 109
CviKI_1 RGCY 4 cut(s) 14, 52, 67, 109
CviQI GTAC 1 cut(s) 22
DpnI GATC 2 cut(s) 180, 187
DpnII GATC 2 cut(s) 178, 185
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 2 cut(s) 151, 164
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 151, 164
ErhI CCWWGG 2 cut(s) 151, 164
FaeI CATG 1 cut(s) 41
FaiI YATR 1 cut(s) 39
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 2 cut(s) 11, 190
GluI GCNGC 1 cut(s) 107
HgaI GACGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 65
HpaI GTTAAC 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 37, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 41
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 178, 185
LguI GCTCTTC 1 cut(s) 108
LpnPI CCDG 2 cut(s) 105, 168
MaeI CTAG 2 cut(s) 11, 190
MalI GATC 2 cut(s) 180, 187
MboI GATC 2 cut(s) 178, 185
MboII GAAGA 2 cut(s) 99, 125
MflI RGATCY 2 cut(s) 178, 185
MnlI CCTC 4 cut(s) 22, 34, 37, 148
MseI TTAA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 2 cut(s) 178, 185
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 3 cut(s) 157, 180, 187
PciSI GCTCTTC 1 cut(s) 108
PflMI CCANNNNNTGG 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 157, 180, 187
PsuI RGATCY 2 cut(s) 178, 185
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 178, 185
ScrFI CCNGG 1 cut(s) 183
SetI ASST 4 cut(s) 16, 69, 157, 166
SsiI CCGC 2 cut(s) 32, 106
SspMI CTAG 2 cut(s) 11, 190
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 2 cut(s) 151, 164
TaqI TCGA 3 cut(s) 111, 125, 140
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 1 cut(s) 177
TspRI CASTG 1 cut(s) 177
Van91I CCANNNNNTGG 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XspI CTAG 2 cut(s) 11, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.