Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016758.1

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

4555 .. 11514

Gene Structure 6960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggtggatgttctagagttcaaggcccccgtttcgaagacgaatcggagcaactgcgaaagaagtgcgcttcgtgtttccgagagctttgaagctttgaatcaacatgctgttgctgtggtggtggatccaattcagagtatgaagaggaaggtggtcattgatgccttccgccttatcaacccacagactatgatgctcggtcaagaacctcggcagaccacatccaatcagggccatcttaataaaccatctattcaagaaaattatcagaaaaatcagaagtttccgaaatgggaaactttttctctctcttcggtcccgaccccggttctccccctcaccttcgccggccgatttcttcctcctccggccaccttttgcttcaattccaaagggaatcctgctctcctcagtcccctctacatgtctgtggtggtgatttgtcgtgggaagcaccgtagacgacactacaaggccgagaagttgcacggtggagctgcaaatcgcctcaaatcgttggccttggttctcccagctccggccaccatagctcgagttcttttagggcttttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

192

Amino Acids

21.4

Weight (kDa)

10.33

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	463
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	2 cut(s)	122, 135
AcoI	YGGCCR	3 cut(s)	352, 372, 543
AfiI	CCNNNNNNNGG	2 cut(s)	328, 541
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	5 cut(s)	22, 92, 100, 260, 388
AluBI	AGCT	5 cut(s)	87, 95, 500, 539, 554
AluI	AGCT	5 cut(s)	87, 95, 500, 539, 554
AlwI	GGATC	2 cut(s)	122, 135
Ama87I	CYCGRG	1 cut(s)	555
AoxI	GGCC	7 cut(s)	24, 235, 352, 372, 477, 522, 543
ApeKI	GCWGC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	3 cut(s)	25, 235, 319
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	334, 451
AsuII	TTCGAA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	555
AvaII	GGWCC	1 cut(s)	319
BamHI	GGATCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	2 cut(s)	246, 259
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	2 cut(s)	14, 577
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	555
BmgT120I	GGNCC	3 cut(s)	25, 235, 319
BmiI	GGNNCC	3 cut(s)	27, 129, 321
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	2 cut(s)	154, 186
BpiI	GAAGAC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	3 cut(s)	212, 327, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 541
Bse118I	RCCGGY	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	212, 327, 525
BseGI	GGATG	2 cut(s)	13, 224
BseLI	CCNNNNNNNGG	2 cut(s)	328, 541
BseMII	CTCAG	1 cut(s)	427
BseRI	GAGGAG	2 cut(s)	357, 401
BseX3I	CGGCCG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	487
BseYI	CCCAGC	1 cut(s)	535
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	7 cut(s)	26, 237, 354, 374, 479, 524, 545
BsiEI	CGRYCG	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	555
BsiSI	CCGG	4 cut(s)	329, 351, 371, 542
BslFI	GGGAC	2 cut(s)	305, 402
BslI	CCNNNNNNNGG	2 cut(s)	328, 541
BsmFI	GGGAC	2 cut(s)	305, 402
BsnI	GGCC	7 cut(s)	26, 237, 354, 374, 479, 524, 545
BsoBI	CYCGRG	1 cut(s)	555
Bsp119I	TTCGAA	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	7 cut(s)	26, 237, 354, 374, 479, 524, 545
BspCNI	CTCAG	1 cut(s)	426
BspLI	GGNNCC	3 cut(s)	27, 129, 321
BspPI	GGATC	2 cut(s)	122, 135
BspT104I	TTCGAA	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	3 cut(s)	212, 327, 525
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	461, 494
Bst6I	CTCTTC	2 cut(s)	140, 319
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	13, 224
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNSI	RCATGY	2 cut(s)	110, 430
BstSCI	CCNGG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BstZI	CGGCCG	1 cut(s)	352
BsuRI	GGCC	7 cut(s)	26, 237, 354, 374, 479, 524, 545
BtsCI	GGATG	2 cut(s)	13, 224
Cac8I	GCNNGC	1 cut(s)	352
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	25, 235, 319
CviAII	CATG	2 cut(s)	107, 427
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EaeI	YGGCCR	3 cut(s)	352, 372, 543
EagI	CGGCCG	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	140, 319
EarI	CTCTTC	2 cut(s)	140, 319
EciI	GGCGGA	1 cut(s)	161
EclXI	CGGCCG	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	319
Eco52I	CGGCCG	1 cut(s)	352
Eco88I	CYCGRG	1 cut(s)	555
EcoO109I	RGGNCCY	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	2 cut(s)	110, 430
FaiI	YATR	5 cut(s)	108, 143, 194, 428, 551
FaqI	GGGAC	2 cut(s)	305, 402
FatI	CATG	2 cut(s)	106, 426
FblI	GTMKAC	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	2 cut(s)	20, 211
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	2 cut(s)	14, 577
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	501
GsaI	CCCAGC	1 cut(s)	539
HaeIII	GGCC	7 cut(s)	26, 237, 354, 374, 479, 524, 545
HapII	CCGG	4 cut(s)	329, 351, 371, 542
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	110, 430
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	3 cut(s)	43, 100, 400
HpaII	CCGG	4 cut(s)	329, 351, 371, 542
HphI	GGTGA	2 cut(s)	334, 451
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	6 cut(s)	48, 82, 138, 273, 282, 291
Hpy188III	TCNNGA	4 cut(s)	14, 206, 260, 322
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	3 cut(s)	145, 178, 355
HpyCH4III	ACNGT	2 cut(s)	461, 494
HpyCH4V	TGCA	2 cut(s)	490, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	110, 430
HspAI	GCGC	1 cut(s)	68
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	3 cut(s)	48, 497, 544
LpnPI	CCDG	7 cut(s)	218, 342, 364, 384, 417, 549, 555
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	2 cut(s)	154, 186
MaeI	CTAG	2 cut(s)	14, 577
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	4 cut(s)	49, 157, 306, 353
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	3 cut(s)	132, 265, 388
MnlI	CCTC	8 cut(s)	141, 222, 350, 375, 378, 422, 431, 521
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	4 cut(s)	329, 351, 371, 542
MspR9I	CCNGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	551
NaeI	GCCGGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	1 cut(s)	127
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	2 cut(s)	110, 430
NlaIV	GGNNCC	3 cut(s)	27, 129, 321
NmeAIII	GCCGAG	2 cut(s)	193, 505
NspI	RCATGY	2 cut(s)	110, 430
NspV	TTCGAA	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	555
PciI	ACATGT	1 cut(s)	426
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	43, 100, 400
PkrI	GCNGC	1 cut(s)	502
PscI	ACATGT	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	535
PspN4I	GGNNCC	3 cut(s)	27, 129, 321
PspPI	GGNCC	3 cut(s)	25, 235, 319
PspXI	VCTCGAGB	1 cut(s)	555
PsuI	RGATCY	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	3 cut(s)	25, 235, 319
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	9 cut(s)	89, 97, 156, 214, 347, 380, 502, 541, 556
SfaNI	GCATC	2 cut(s)	154, 186
Sfr274I	CTCGAG	1 cut(s)	555
SfuI	TTCGAA	1 cut(s)	35
SinI	GGWCC	1 cut(s)	319
SlaI	CTCGAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
Sse9I	AATT	3 cut(s)	132, 265, 388
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	2 cut(s)	14, 577
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	2 cut(s)	461, 494
TaqI	TCGA	2 cut(s)	35, 556
TaqII	GACCGA	2 cut(s)	191, 307
TasI	AATT	3 cut(s)	132, 265, 388
TfiI	GAWTC	3 cut(s)	43, 100, 400
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	13
XceI	RCATGY	2 cut(s)	110, 430
XhoI	CTCGAG	1 cut(s)	555
XmiI	GTMKAC	1 cut(s)	463
XspI	CTAG	2 cut(s)	14, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.