Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

51862719 .. 51863872

Gene Structure 1154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCTGGCATGGAAAGGCTACAGAGAATGTTCGCCGGTGCTGGAGGAGCTTTGGGCCACCCGCCGCCCGATTCCCCCACCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCTTGGCGCTCCTCAAAATGCTCAAGCACGGAAGAGCTGGGGTTCCAATGGAGGTCATGGGATTGATGCTGGGAGAGTTTGTGGATGAATACACTGTTCGTGTTGTTGACGTCTTTGCGATGCCGCAGAGTGGTACTGGTGTCAGTGTCGAAGCCGTCGATCATGTCTTCCAGACTAATATGCTTGATATGCTTAAGCAGACCGGACGCAACCACAGTATGCTTAGAAGCTGCAGTATCGATAGCAAACAAAAGAAGCTGAAATCTCACATATCTCATGTGCACCGGAAGCAGCACAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

139

Amino Acids

15.22

Weight (kDa)

9.17

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	30 - 109	5.9e-18	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	3 cut(s)	62, 65, 236
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	242
AflII	CTTAAG	1 cut(s)	305
AluBI	AGCT	4 cut(s)	50, 149, 342, 370
AluI	AGCT	4 cut(s)	50, 149, 342, 370
Alw21I	GWGCWC	1 cut(s)	396
Alw44I	GTGCAC	1 cut(s)	392
AoxI	GGCC	1 cut(s)	55
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	342, 403
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	396
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BbsI	GAAGAC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	251
BfmI	CTRYAG	2 cut(s)	20, 343
BfoI	RGCGCY	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	4 cut(s)	65, 236, 343, 404
BlsI	GCNGC	4 cut(s)	66, 237, 344, 405
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	2 cut(s)	168, 222
BpiI	GAAGAC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	2 cut(s)	314, 396
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	253
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	3 cut(s)	60, 100, 113
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	2 cut(s)	149, 181
BshFI	GGCC	1 cut(s)	57
BshVI	ATCGAT	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	36, 315, 397
BslI	CCNNNNNNNGG	1 cut(s)	242
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	3 cut(s)	62, 65, 236
BspANI	GGCC	1 cut(s)	57
BspDI	ATCGAT	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	88
BspQI	GCTCTTC	1 cut(s)	139
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	271
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	208, 329
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 301, 400
BstSFI	CTRYAG	2 cut(s)	20, 343
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	57
BsuTUI	ATCGAT	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	204, 262
BveI	ACCTGC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	4 cut(s)	10, 169, 275, 389
CviJI	RGCY	7 cut(s)	19, 50, 57, 149, 266, 342, 370
CviKI_1	RGCY	7 cut(s)	19, 50, 57, 149, 266, 342, 370
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	4 cut(s)	13, 172, 278, 392
FaiI	YATR	8 cut(s)	11, 170, 276, 293, 302, 332, 383, 390
FatI	CATG	4 cut(s)	9, 168, 274, 388
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	65, 236, 343, 404
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	4 cut(s)	65, 236, 343, 404
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	65, 236, 343, 404
GsaI	CCCAGC	2 cut(s)	153, 185
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	3 cut(s)	36, 315, 397
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	13, 172, 278, 392
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	71, 86
HpaII	CCGG	3 cut(s)	36, 315, 397
Hpy166II	GTNNAC	3 cut(s)	103, 220, 394
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	3 cut(s)	103, 220, 394
Hpy99I	CGWCG	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	208, 329
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	345, 394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 301, 400
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	13, 172, 278, 392
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	271
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	47, 126
LpnPI	CCDG	9 cut(s)	27, 49, 83, 135, 167, 234, 296, 328, 410
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	2 cut(s)	168, 222
MaeII	ACGT	1 cut(s)	222
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	2 cut(s)	156, 271
MhlI	GDGCHC	1 cut(s)	396
MnlI	CCTC	6 cut(s)	38, 92, 100, 121, 134, 157
MseI	TTAA	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	3 cut(s)	36, 315, 397
MwoI	GCNNNNNNNGC	3 cut(s)	47, 301, 400
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	4 cut(s)	13, 172, 278, 392
NlaIV	GGNNCC	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 267
PfeI	GAWTC	2 cut(s)	71, 86
PkrI	GCNGC	4 cut(s)	66, 237, 344, 405
PspFI	CCCAGC	2 cut(s)	149, 181
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	4 cut(s)	65, 236, 343, 404
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	7 cut(s)	52, 102, 151, 168, 225, 344, 372
SfaNI	GCATC	2 cut(s)	168, 222
SfcI	CTRYAG	2 cut(s)	20, 343
SgrAI	CRCCGGYG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	134, 305
SmoI	CTYRAG	2 cut(s)	134, 305
SsiI	CCGC	3 cut(s)	62, 65, 236
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	208, 329
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	4 cut(s)	84, 261, 270, 351
TauI	GCSGC	2 cut(s)	67, 238
TfiI	GAWTC	2 cut(s)	71, 86
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	211, 262
TseI	GCWGC	2 cut(s)	342, 403
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	211, 262
Vha464I	CTTAAG	1 cut(s)	305
VneI	GTGCAC	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	102
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.