Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

19105249 .. 19109924

Gene Structure 4676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCTGATGACGCATTTAGAAATCTTGGGCTGTTACCAGAGATGGTAGTTGGGCGGTACCATTCGCATCCTGGATTTGGATGTTGGCTATCCGGTGTGGACATTAATACCCAGCAGAGCTTTGAAGCTTTGAATCAACGGGCTGTAGCTGTAGTGGTGGATCCAATTCAGAGCGTGAAGGGGAAGGTAGTCATTGATGCAATCCGCCTTATCAACCCACAAACTATGATGCTTGGCCAAGAACCACGGCAGACCACATCCAATCTCGGGCATCTAAATAAGCCATCAATTCAAGCCTTGATCCATGGGTTAAATCGTCATTATTACTCCATAGCAATCAATTACCGGAAGAATGAACTCGAGGAGAAAATGTTGCTTAACCTTCACAAGAAGAAATGGACAGATGGGCTGACACTAAAGCGATTTGACACTCATTCAAAAACAAATGAGCAAACAGTTCAGGAGATGTTAAATCTAGCTGTTAAATACAACAAGGCAGTGCAGGAGGAGGATGAGCTGCCACCAGAGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGTTAAGAAGCACCTCGAAGAGCATGTCTCCAACTTAATGTCCTCAAACATTGTCCAGACCTTGGGCACAATGCTTGATACTCTGGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

217

Amino Acids

24.58

Weight (kDa)

7.14

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	14 - 46	6.4e-08	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
RPN11_C	PF23594	136 - 214	5.2e-34	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	57
AccB7I	CCANNNNNTGG	1 cut(s)	622
AciI	CCGC	2 cut(s)	55, 205
AclWI	GGATC	3 cut(s)	155, 168, 295
AcoI	YGGCCR	1 cut(s)	235
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	77, 267, 622
AgsI	TTSAA	4 cut(s)	125, 133, 293, 438
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	6 cut(s)	120, 128, 149, 479, 517, 532
AluI	AGCT	6 cut(s)	120, 128, 149, 479, 517, 532
Alw26I	GTCTC	1 cut(s)	592
AlwI	GGATC	3 cut(s)	155, 168, 295
Ama87I	CYCGRG	2 cut(s)	266, 359
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	517
ArsI	GACNNNNNNTTYG	2 cut(s)	570, 602
AseI	ATTAAT	1 cut(s)	105
Asp718I	GGTACC	1 cut(s)	57
AvaI	CYCGRG	2 cut(s)	266, 359
BaeGI	GKGCMC	1 cut(s)	629
BaeI	ACNNNNGTAYC	1 cut(s)	630
BalI	TGGCCA	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	504
BccI	CCATC	3 cut(s)	37, 292, 398
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	2 cut(s)	476, 652
BfmI	CTRYAG	2 cut(s)	144, 150
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
Bme1390I	CCNGG	1 cut(s)	72
BmeT110I	CYCGRG	2 cut(s)	266, 359
BmiI	GGNNCC	2 cut(s)	59, 162
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	4 cut(s)	76, 187, 219, 280
BpiI	GAAGAC	1 cut(s)	559
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BsaJI	CCNNGG	3 cut(s)	245, 304, 621
BsaWI	WCCGGW	2 cut(s)	92, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 267, 622
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	3 cut(s)	245, 304, 621
BseGI	GGATG	4 cut(s)	67, 86, 257, 517
BseLI	CCNNNNNNNGG	3 cut(s)	77, 267, 622
BseRI	GAGGAG	2 cut(s)	377, 521
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	504
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	521
BshFI	GGCC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	57
BsiHKCI	CYCGRG	2 cut(s)	266, 359
BsiSI	CCGG	2 cut(s)	93, 346
BslI	CCNNNNNNNGG	3 cut(s)	77, 267, 622
BsmAI	GTCTC	1 cut(s)	592
BsnI	GGCC	1 cut(s)	237
BsoBI	CYCGRG	2 cut(s)	266, 359
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp143I	GATC	2 cut(s)	160, 300
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	2 cut(s)	55, 205
BspANI	GGCC	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	59, 162
BspPI	GGATC	3 cut(s)	155, 168, 295
BspQI	GCTCTTC	1 cut(s)	573
BspT107I	GGYRCC	1 cut(s)	57
BssECI	CCNNGG	3 cut(s)	245, 304, 621
BssMI	GATC	2 cut(s)	160, 300
BssT1I	CCWWGG	2 cut(s)	304, 621
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	534
BstDSI	CCRYGG	2 cut(s)	245, 304
BstF5I	GGATG	4 cut(s)	67, 86, 257, 517
BstKTI	GATC	2 cut(s)	163, 303
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	2 cut(s)	160, 300
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	70
BstSFI	CTRYAG	2 cut(s)	144, 150
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	504
BstV2I	GAAGAC	1 cut(s)	559
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	237
BtgI	CCRYGG	2 cut(s)	245, 304
BtsCI	GGATG	4 cut(s)	67, 86, 257, 517
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	534
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	2 cut(s)	305, 584
CviQI	GTAC	1 cut(s)	58
DpnI	GATC	2 cut(s)	162, 302
DpnII	GATC	2 cut(s)	160, 300
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	304, 621
Eco88I	CYCGRG	2 cut(s)	266, 359
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	304, 621
ErhI	CCWWGG	2 cut(s)	304, 621
FaeI	CATG	2 cut(s)	308, 587
FaiI	YATR	4 cut(s)	227, 306, 332, 585
FatI	CATG	2 cut(s)	304, 583
Fnu4HI	GCNGC	1 cut(s)	518
FokI	GGATG	4 cut(s)	54, 93, 244, 524
Fsp4HI	GCNGC	1 cut(s)	518
FspBI	CTAG	2 cut(s)	476, 652
GluI	GCNGC	1 cut(s)	518
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	2 cut(s)	93, 346
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	308, 587
HindIII	AAGCTT	2 cut(s)	126, 530
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	2 cut(s)	93, 346
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	7, 171
Hpy188III	TCNNGA	2 cut(s)	461, 616
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	172, 178, 392
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	4 cut(s)	200, 502, 536, 542
Hsp92II	CATG	2 cut(s)	308, 587
KpnI	GGTACC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	160, 300
LguI	GCTCTTC	1 cut(s)	573
Lsp1109I	GCAGC	1 cut(s)	504
LweI	GCATC	4 cut(s)	76, 187, 219, 280
MaeI	CTAG	2 cut(s)	476, 652
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	2 cut(s)	162, 302
MboI	GATC	2 cut(s)	160, 300
MboII	GAAGA	4 cut(s)	361, 403, 564, 590
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	629
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	4 cut(s)	165, 288, 340, 537
MluNI	TGGCCA	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	5 cut(s)	355, 499, 502, 584, 613
Mox20I	TGGCCA	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	7 cut(s)	105, 311, 378, 470, 483, 564, 596
Msp20I	TGGCCA	1 cut(s)	237
MspI	CCGG	2 cut(s)	93, 346
MspR9I	CCNGG	1 cut(s)	72
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	2 cut(s)	160, 300
NlaIII	CATG	2 cut(s)	308, 587
NlaIV	GGNNCC	2 cut(s)	59, 162
NspI	RCATGY	1 cut(s)	587
PaeR7I	CTCGAG	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	622
PfoI	TCCNGGA	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	519
PshBI	ATTAAT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	59, 162
PspXI	VCTCGAGB	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	573
SaqAI	TTAA	7 cut(s)	105, 311, 378, 470, 483, 564, 596
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	2 cut(s)	160, 300
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	629
SfaNI	GCATC	4 cut(s)	76, 187, 219, 280
SfcI	CTRYAG	2 cut(s)	144, 150
Sfr274I	CTCGAG	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	165, 288, 340, 537
SsiI	CCGC	2 cut(s)	55, 205
SspMI	CTAG	2 cut(s)	476, 652
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	2 cut(s)	304, 621
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	2 cut(s)	360, 576
TasI	AATT	4 cut(s)	165, 288, 340, 537
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	7 cut(s)	105, 311, 378, 470, 483, 564, 596
Tru9I	TTAA	7 cut(s)	105, 311, 378, 470, 483, 564, 596
TscAI	CASTG	1 cut(s)	504
TseI	GCWGC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	504
Van91I	CCANNNNNTGG	1 cut(s)	622
VspI	ATTAAT	1 cut(s)	105
XceI	RCATGY	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	359
XspI	CTAG	2 cut(s)	476, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.