Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003785.1

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

66221 .. 68344

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003785.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgtcaggtatggagaggctgcagagaatgttcgccggtgccggaggagctttgggccacccgccgcccgactcccccaccctcgattcctccgagcaggtctacatctcctccttggcgctcctcaaaatgctcaagcacggaagagctggggttcctatggaggtcatgggattgatgctgggagagtttgtggatgaatacactgttcgtgttgttgacgtctttgcgatgccgcagagtggtactggtgtcagtgtcgaagccgtcgatcatgtcttccagactaatatgcttgatatgcttaagcagaccggacgtgaaattcagattgcttgcggcaaattagacaagtcctttaaggatcttgtgcgtgaggcggctacgtttccttttatgtcactttcaccacctagacactcctattcttcctttccctctgcccgtacttcctatggcactgttgatgaggatgttctgcaatcatcacctgctcaactggacaggataggccttcaggtggggatgccacaagccctggatctattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

183

Amino Acids

19.87

Weight (kDa)

5.13

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	2 cut(s)	88, 499
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	5 cut(s)	62, 65, 236, 339, 380
AclWI	GGATC	2 cut(s)	372, 549
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	247, 448
AfiI	CCNNNNNNNGG	2 cut(s)	242, 520
AflII	CTTAAG	1 cut(s)	305
AjiI	CACGTC	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	2 cut(s)	50, 149
AluI	AGCT	2 cut(s)	50, 149
AlwI	GGATC	2 cut(s)	372, 549
AoxI	GGCC	2 cut(s)	55, 511
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	399, 480
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	6
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	539
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	2 cut(s)	88, 499
BisI	GCNGC	5 cut(s)	20, 65, 236, 340, 381
BlsI	GCNGC	5 cut(s)	21, 66, 237, 341, 382
Bme1390I	CCNGG	1 cut(s)	539
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	40, 156
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	3 cut(s)	168, 222, 516
BpiI	GAAGAC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	114, 537
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 520
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	253, 504
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	114, 537
BseGI	GGATG	3 cut(s)	202, 478, 531
BseLI	CCNNNNNNNGG	2 cut(s)	242, 520
BseNI	ACTGG	2 cut(s)	253, 504
BseRI	GAGGAG	3 cut(s)	60, 100, 113
BseXI	GCAGC	1 cut(s)	6
BseYI	CCCAGC	2 cut(s)	149, 181
BshFI	GGCC	2 cut(s)	57, 513
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	36, 42, 315
BslI	CCNNNNNNNGG	2 cut(s)	242, 520
BsnI	GGCC	2 cut(s)	57, 513
Bsp143I	GATC	3 cut(s)	271, 364, 541
BspACI	CCGC	5 cut(s)	62, 65, 236, 339, 380
BspANI	GGCC	2 cut(s)	57, 513
BspLI	GGNNCC	2 cut(s)	40, 156
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	2 cut(s)	88, 499
BspPI	GGATC	2 cut(s)	372, 549
BspQI	GCTCTTC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	38
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	253, 504
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	114, 537
BssMI	GATC	3 cut(s)	271, 364, 541
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	2 cut(s)	208, 463
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	202, 478, 531
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	3 cut(s)	274, 367, 544
BstMBI	GATC	3 cut(s)	271, 364, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 301
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	2 cut(s)	364, 541
BstYI	RGATCY	2 cut(s)	364, 541
BsuRI	GGCC	2 cut(s)	57, 513
BtgZI	GCGATG	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	202, 478, 531
BtsIMutI	CAGTG	3 cut(s)	204, 262, 459
BveI	ACCTGC	2 cut(s)	88, 499
Cac8I	GCNNGC	1 cut(s)	337
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	246, 447
CviAII	CATG	2 cut(s)	169, 275
CviJI	RGCY	8 cut(s)	19, 50, 57, 149, 266, 383, 513, 536
CviKI_1	RGCY	8 cut(s)	19, 50, 57, 149, 266, 383, 513, 536
CviQI	GTAC	2 cut(s)	246, 447
DpnI	GATC	3 cut(s)	273, 366, 543
DpnII	GATC	3 cut(s)	271, 364, 541
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	172, 278
FaiI	YATR	9 cut(s)	11, 161, 170, 276, 293, 302, 398, 456, 550
FatI	CATG	2 cut(s)	168, 274
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	20, 65, 236, 340, 381
FokI	GGATG	3 cut(s)	209, 485, 538
Fsp4HI	GCNGC	5 cut(s)	20, 65, 236, 340, 381
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	5 cut(s)	20, 65, 236, 340, 381
GsaI	CCCAGC	2 cut(s)	153, 185
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	57, 513
HapII	CCGG	3 cut(s)	36, 42, 315
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	172, 278
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	71, 86
HpaII	CCGG	3 cut(s)	36, 42, 315
HphI	GGTGA	2 cut(s)	399, 480
Hpy166II	GTNNAC	2 cut(s)	103, 220
Hpy188I	TCNGA	2 cut(s)	94, 330
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	2 cut(s)	103, 220
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	2 cut(s)	208, 463
HpyCH4IV	ACGT	3 cut(s)	222, 319, 386
HpyCH4V	TGCA	2 cut(s)	22, 481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 301
HpySE526I	ACGT	3 cut(s)	222, 319, 386
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	172, 278
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	271, 364, 541
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	47, 126
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	3 cut(s)	168, 222, 516
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	3 cut(s)	222, 319, 386
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	3 cut(s)	273, 366, 543
MboI	GATC	3 cut(s)	271, 364, 541
MboII	GAAGA	3 cut(s)	156, 271, 420
MflI	RGATCY	2 cut(s)	364, 541
MluCI	AATT	2 cut(s)	324, 344
MlyI	GAGTC	1 cut(s)	65
MseI	TTAA	2 cut(s)	306, 360
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	3 cut(s)	36, 42, 315
MspR9I	CCNGG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	47, 301
NdeII	GATC	3 cut(s)	271, 364, 541
NlaIII	CATG	2 cut(s)	172, 278
NlaIV	GGNNCC	2 cut(s)	40, 156
NmuCI	GTSAC	1 cut(s)	399
PaqCI	CACCTGC	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 267
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	5 cut(s)	21, 66, 237, 341, 382
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	537
PspFI	CCCAGC	2 cut(s)	149, 181
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	40, 156
PspPI	GGNCC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	364, 541
RsaI	GTAC	2 cut(s)	247, 448
RsaNI	GTAC	2 cut(s)	246, 447
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	306, 360
SatI	GCNGC	5 cut(s)	20, 65, 236, 340, 381
Sau3AI	GATC	3 cut(s)	271, 364, 541
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	539
SfaNI	GCATC	3 cut(s)	168, 222, 516
SfcI	CTRYAG	1 cut(s)	20
SgrAI	CRCCGGYG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	134, 305
SmoI	CTYRAG	2 cut(s)	134, 305
Sse9I	AATT	2 cut(s)	324, 344
SseBI	AGGCCT	1 cut(s)	513
SsiI	CCGC	5 cut(s)	62, 65, 236, 339, 380
SspMI	CTAG	1 cut(s)	414
StuI	AGGCCT	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	208, 463
TaiI	ACGT	3 cut(s)	225, 322, 389
TaqI	TCGA	3 cut(s)	84, 261, 270
TasI	AATT	2 cut(s)	324, 344
TauI	GCSGC	4 cut(s)	67, 238, 342, 383
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	306, 360
Tru9I	TTAA	2 cut(s)	306, 360
TscAI	CASTG	3 cut(s)	211, 262, 466
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	3 cut(s)	211, 262, 466
Vha464I	CTTAAG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	1 cut(s)	414
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.