Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

25681626 .. 25684582

Gene Structure 2957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCAGGGATGGAGAGACTACAGAGGATGTTCGCCGGCGCCGGAGGAGCTCTGGGTCACCCACCCCCGGATTCGCCCACTCTCGATTCCTCAGAACAGGTCTACATCTCCTCGCTCGCGCTGTTGAAGATGCTAAAGCACGGAAGAGCGGGGGTGCCTATGGAGGTCATGGGCTTGATGCTGGGAGAGTTTACTGATGAGTATACTGTTAAGGTTGTGGATGTGTTTGCTATGCCGCAGAGTGGTACTGGTGTTAGTGTCGAAGCAGTCGATCACGTGTTCCAGACTAACATGCTCGATATGCTCAAGCAGACCGGAAGGCCGGAGATGGTTGTAGGGTGGTACCATTCGCATCCTGGATTCGGCTGTTGGCTATCTGGTGTGGACATTAATACACAGCAGAGCTTCGAAGCTTTGAATCAACGTGCTGTGGCTGTGGTGGTGGATCCCATTCAGAGTGTGAAGGGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGATGCTTGGTCAAGAACCTCGGCAGACCACATCCAATCTTGGCCATCTTAATAAACCATCTATTCAAGCTTTGATCCATGGTTTAAACCGGCATTATTACTCTATAGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTAACCTTCACAAGAAGAAATGGACTGATGGGCTGACCCTAAAACGTTTTGATACTCATTCAAAAACAAATGAGCAAACTGTTCAGGTAAGTAAAGATATCGCCTACTGCAAATTAGTGGTTTTGTACTGTCATGTTTTTTTTTTTTTAAAAGCATGTACTTTAAGTTACCAATATGGAAGGAGGTTACTCTGCTGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

288

Amino Acids

32.32

Weight (kDa)

8.71

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	30 - 141	1.3e-34	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB	PF14464	41 - 131	2.3e-06	Prokaryotic homologs of the JAB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	3 cut(s)	38, 154, 342
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	2 cut(s)	102, 203
AccII	CGCG	1 cut(s)	119
AciI	CCGC	3 cut(s)	149, 236, 490
AclI	AACGTT	1 cut(s)	706
AclWI	GGATC	3 cut(s)	440, 453, 580
AcoI	YGGCCR	1 cut(s)	553
AcvI	CACGTG	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	4 cut(s)	247, 344, 788, 820
AfiI	CCNNNNNNNGG	3 cut(s)	67, 242, 362
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	127, 418, 578, 723
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	4 cut(s)	50, 405, 413, 581
AluI	AGCT	4 cut(s)	50, 405, 413, 581
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	3 cut(s)	440, 453, 580
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	320, 553
AseI	ATTAAT	1 cut(s)	390
Asp718I	GGTACC	1 cut(s)	342
AspLEI	GCGC	2 cut(s)	41, 121
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	50
AsuII	TTCGAA	1 cut(s)	408
AvaI	CYCGRG	1 cut(s)	644
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BalI	TGGCCA	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	3 cut(s)	38, 154, 342
BanII	GRGCYC	1 cut(s)	52
BbrPI	CACGTG	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	52
BccI	CCATC	5 cut(s)	4, 322, 564, 577, 683
BciT130I	CCWGG	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	10
BfmI	CTRYAG	2 cut(s)	20, 615
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	68, 357
BmeT110I	CYCGRG	1 cut(s)	644
BmiI	GGNNCC	4 cut(s)	40, 156, 344, 447
BmrFI	CCNGG	2 cut(s)	68, 357
BmsI	GCATC	5 cut(s)	120, 168, 361, 472, 504
Bpu14I	TTCGAA	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	68
BsaAI	YACGTR	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	66, 530, 589
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 242, 362
Bse118I	RCCGGY	2 cut(s)	35, 600
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	66, 530, 589
BseGI	GGATG	5 cut(s)	15, 33, 226, 352, 542
BseLI	CCNNNNNNNGG	3 cut(s)	67, 242, 362
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	3 cut(s)	60, 100, 662
BseYI	CCCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	322, 555
BshNI	GGYRCC	3 cut(s)	38, 154, 342
BsiHKAI	GWGCWC	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	6 cut(s)	36, 42, 68, 315, 323, 601
BslI	CCNNNNNNNGG	3 cut(s)	67, 242, 362
BsmAI	GTCTC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	322, 555
BsoBI	CYCGRG	1 cut(s)	644
Bsp119I	TTCGAA	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	271, 445, 585
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	3 cut(s)	149, 236, 490
BspANI	GGCC	2 cut(s)	322, 555
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	4 cut(s)	40, 156, 344, 447
BspPI	GGATC	3 cut(s)	440, 453, 580
BspQI	GCTCTTC	1 cut(s)	139
BspT104I	TTCGAA	1 cut(s)	408
BspT107I	GGYRCC	3 cut(s)	38, 154, 342
BsrBI	CCGCTC	1 cut(s)	149
BsrFI	RCCGGY	2 cut(s)	35, 600
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	2 cut(s)	35, 600
BssECI	CCNNGG	3 cut(s)	66, 530, 589
BssMI	GATC	3 cut(s)	271, 445, 585
BssNAI	GTATAC	1 cut(s)	204
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	589
Bst1107I	GTATAC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	208, 742, 791
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	408
BstC8I	GCNNGC	3 cut(s)	37, 117, 857
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	589
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	5 cut(s)	15, 33, 226, 352, 542
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 121
BstKTI	GATC	3 cut(s)	274, 448, 588
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	3 cut(s)	271, 445, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 301
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	2 cut(s)	295, 819
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	66, 355
BstSFI	CTRYAG	2 cut(s)	20, 615
BstUI	CGCG	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BstZ17I	GTATAC	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	322, 555
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	5 cut(s)	15, 33, 226, 352, 542
Cac8I	GCNNGC	3 cut(s)	37, 117, 857
CfoI	GCGC	2 cut(s)	41, 121
Cfr10I	RCCGGY	2 cut(s)	35, 600
Csp6I	GTAC	4 cut(s)	246, 343, 787, 819
CviAII	CATG	5 cut(s)	169, 292, 590, 794, 816
CviQI	GTAC	4 cut(s)	246, 343, 787, 819
DdeI	CTNAG	1 cut(s)	91
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	3 cut(s)	273, 447, 587
DpnII	GATC	3 cut(s)	271, 445, 585
DraI	TTTAAA	2 cut(s)	597, 810
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	479
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	760
Eco53kI	GAGCTC	1 cut(s)	50
Eco72I	CACGTG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	644
Eco91I	GGTNACC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	760
EcoT14I	CCWWGG	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	52
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	5 cut(s)	172, 295, 593, 797, 819
FatI	CATG	5 cut(s)	168, 291, 589, 793, 815
FauI	CCCGC	1 cut(s)	142
FblI	GTMKAC	2 cut(s)	102, 203
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	5 cut(s)	22, 40, 233, 339, 529
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	236
GlaI	GCGC	2 cut(s)	40, 120
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	322, 555
HapII	CCGG	6 cut(s)	36, 42, 68, 315, 323, 601
HhaI	GCGC	2 cut(s)	41, 121
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	172, 295, 593, 797, 819
Hin6I	GCGC	2 cut(s)	39, 119
HinP1I	GCGC	2 cut(s)	39, 119
HindIII	AAGCTT	2 cut(s)	411, 579
HinfI	GANTC	4 cut(s)	71, 86, 360, 418
HpaII	CCGG	6 cut(s)	36, 42, 68, 315, 323, 601
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	4 cut(s)	103, 192, 204, 385
Hpy188I	TCNGA	2 cut(s)	94, 456
Hpy188III	TCNNGA	3 cut(s)	83, 283, 524
Hpy8I	GTNNAC	4 cut(s)	103, 192, 204, 385
HpyAV	CCTTC	6 cut(s)	312, 457, 463, 496, 677, 834
HpyCH4III	ACNGT	3 cut(s)	208, 742, 791
HpyCH4IV	ACGT	3 cut(s)	276, 424, 706
HpyCH4V	TGCA	1 cut(s)	771
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 301
HpyF3I	CTNAG	1 cut(s)	91
HpySE526I	ACGT	3 cut(s)	276, 424, 706
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	172, 295, 593, 797, 819
HspAI	GCGC	2 cut(s)	39, 119
KasI	GGCGCC	1 cut(s)	38
KpnI	GGTACC	1 cut(s)	346
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	271, 445, 585
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	47
LweI	GCATC	5 cut(s)	120, 168, 361, 472, 504
MaeII	ACGT	3 cut(s)	276, 424, 706
MaeIII	GTNAC	3 cut(s)	56, 827, 846
MalI	GATC	3 cut(s)	273, 447, 587
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	3 cut(s)	271, 445, 585
MboII	GAAGA	5 cut(s)	139, 156, 646, 664, 688
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	2 cut(s)	625, 773
MluNI	TGGCCA	1 cut(s)	555
Mly113I	GGCGCC	1 cut(s)	39
MnlI	CCTC	8 cut(s)	18, 38, 100, 121, 157, 540, 640, 837
Mox20I	TGGCCA	1 cut(s)	555
MreI	CGCCGGCG	1 cut(s)	35
MroNI	GCCGGC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	7 cut(s)	210, 390, 561, 596, 663, 809, 824
Msp20I	TGGCCA	1 cut(s)	555
MspI	CCGG	6 cut(s)	36, 42, 68, 315, 323, 601
MspR9I	CCNGG	2 cut(s)	68, 357
MssI	GTTTAAAC	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	47, 301
NaeI	GCCGGC	1 cut(s)	37
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	271, 445, 585
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	5 cut(s)	172, 295, 593, 797, 819
NlaIV	GGNNCC	4 cut(s)	40, 156, 344, 447
NmeAIII	GCCGAG	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	2 cut(s)	295, 819
NspV	TTCGAA	1 cut(s)	408
PaeR7I	CTCGAG	1 cut(s)	644
PciSI	GCTCTTC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	4 cut(s)	71, 86, 360, 418
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	237
PluTI	GGCGCC	1 cut(s)	42
PmaCI	CACGTG	1 cut(s)	277
PmeI	GTTTAAAC	1 cut(s)	597
PmlI	CACGTG	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	277
PshBI	ATTAAT	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	52
Psp1406I	AACGTT	1 cut(s)	706
Psp6I	CCWGG	1 cut(s)	355
PspCI	CACGTG	1 cut(s)	277
PspEI	GGTNACC	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	4 cut(s)	40, 156, 344, 447
PspXI	VCTCGAGB	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	4 cut(s)	247, 344, 788, 820
RsaNI	GTAC	4 cut(s)	246, 343, 787, 819
SacI	GAGCTC	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	7 cut(s)	210, 390, 561, 596, 663, 809, 824
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	3 cut(s)	271, 445, 585
ScrFI	CCNGG	2 cut(s)	68, 357
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	5 cut(s)	120, 168, 361, 472, 504
SfcI	CTRYAG	2 cut(s)	20, 615
SfoI	GGCGCC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	644
SfuI	TTCGAA	1 cut(s)	408
SgrAI	CRCCGGYG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	644
SmlI	CTYRAG	2 cut(s)	305, 644
SmoI	CTYRAG	2 cut(s)	305, 644
Sse9I	AATT	2 cut(s)	625, 773
SsiI	CCGC	3 cut(s)	149, 236, 490
SspDI	GGCGCC	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	2 cut(s)	66, 355
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	3 cut(s)	208, 742, 791
TaiI	ACGT	3 cut(s)	279, 427, 709
TaqI	TCGA	6 cut(s)	84, 261, 270, 297, 408, 645
TasI	AATT	2 cut(s)	625, 773
TatI	WGTACW	2 cut(s)	786, 818
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	4 cut(s)	71, 86, 360, 418
Tru1I	TTAA	7 cut(s)	210, 390, 561, 596, 663, 809, 824
Tru9I	TTAA	7 cut(s)	210, 390, 561, 596, 663, 809, 824
TseFI	GTSAC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	654
TspGWI	ACGGA	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	390
XceI	RCATGY	2 cut(s)	295, 819
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	644
XmiI	GTMKAC	2 cut(s)	102, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.