Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Forward (+)

67640421 .. 67640964

Gene Structure 544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21645

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTCAAGCATGGAAGAACCGGGGTTCCTATGGAGGTCATGGGATTGATGATCGGTGAGTTCGTGGACGATTACACAGTTTGTGTGGTTGATGTCTTTGCAATGCCGCAGAACGGTACCGGTACCGGACCACCGGAGATGGTTGTTGGGTGGTACCATTCTCACTCGGGATTTGGTTGCTGGCTATCTGGTCGTGCTGTGGCTGTGGAGGTGGATCCGATTCAAAGTGTCAAGGGCAAGGTGGTTATGGATACGTTCCGCCTTATCAACCCCCAAACTATGATGTTTGGTCAAGAACCGAGGCATACCACATCCAATCTAGGGCATCTCAATAAGCCATCCATTCAAGCGTTGGTGCATGGGTTAAGCCGACATCATTATTCCATAGCGATTAACTACAGGAAGAATGAACTTGTTCGAGGAGAAGATGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

145

Amino Acids

16.02

Weight (kDa)

6.7

Isoelectric Point (pI)

22.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	1 - 41	1.4e-06	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	116, 122, 153
AccB1I	GGYRCC	3 cut(s)	116, 122, 153
AciI	CCGC	2 cut(s)	107, 259
AclWI	GGATC	2 cut(s)	209, 222
AfaI	GTAC	3 cut(s)	118, 124, 155
AfiI	CCNNNNNNNGG	2 cut(s)	113, 321
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	224, 347
AloI	GAACNNNNNNTCC	2 cut(s)	10, 42
AlwI	GGATC	2 cut(s)	209, 222
Ama87I	CYCGRG	1 cut(s)	166
AsiGI	ACCGGT	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	414
Asp718I	GGTACC	3 cut(s)	116, 122, 153
AspS9I	GGNCC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	214
BanI	GGYRCC	3 cut(s)	116, 122, 153
BccI	CCATC	2 cut(s)	133, 346
BciVI	GTATCC	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	22
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	5 cut(s)	27, 118, 124, 155, 216
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	334
BpuMI	CCSGG	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	21, 299
BsaWI	WCCGGW	3 cut(s)	119, 125, 133
BsaXI	ACNNNNNCTCC	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 321
Bse118I	RCCGGY	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	21, 299
BseGI	GGATG	2 cut(s)	311, 338
BseLI	CCNNNNNNNGG	2 cut(s)	113, 321
BseMI	GCAATG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	435
BshNI	GGYRCC	3 cut(s)	116, 122, 153
BshTI	ACCGGT	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	4 cut(s)	21, 120, 126, 134
BslI	CCNNNNNNNGG	2 cut(s)	113, 321
BsoBI	CYCGRG	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	51, 214
BspACI	CCGC	2 cut(s)	107, 259
BspLI	GGNNCC	5 cut(s)	27, 118, 124, 155, 216
BspPI	GGATC	2 cut(s)	209, 222
BspT107I	GGYRCC	3 cut(s)	116, 122, 153
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	21, 299
BssMI	GATC	2 cut(s)	51, 214
Bst4CI	ACNGT	2 cut(s)	79, 116
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	311, 338
BstKTI	GATC	2 cut(s)	54, 217
BstMBI	GATC	2 cut(s)	51, 214
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	311, 338
Cac8I	GCNNGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	117, 123, 154
CspAI	ACCGGT	1 cut(s)	119
CviAII	CATG	3 cut(s)	11, 40, 359
CviJI	RGCY	4 cut(s)	184, 203, 337, 369
CviKI_1	RGCY	4 cut(s)	184, 203, 337, 369
CviQI	GTAC	3 cut(s)	117, 123, 154
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	2 cut(s)	53, 216
DpnII	GATC	2 cut(s)	51, 214
EciI	GGCGGA	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	166
FaeI	CATG	3 cut(s)	14, 43, 362
FaiI	YATR	8 cut(s)	12, 32, 41, 248, 281, 306, 360, 386
FatI	CATG	3 cut(s)	10, 39, 358
Fnu4HI	GCNGC	1 cut(s)	107
FokI	GGATG	2 cut(s)	298, 325
Fsp4HI	GCNGC	1 cut(s)	107
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	1 cut(s)	107
HapII	CCGG	4 cut(s)	21, 120, 126, 134
Hin1II	CATG	3 cut(s)	14, 43, 362
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	4 cut(s)	21, 120, 126, 134
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	2 cut(s)	168, 293
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4III	ACNGT	2 cut(s)	79, 116
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	101, 358
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	3 cut(s)	14, 43, 362
KpnI	GGTACC	3 cut(s)	120, 126, 157
Kzo9I	GATC	2 cut(s)	51, 214
LpnPI	CCDG	7 cut(s)	34, 133, 139, 147, 166, 174, 385
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	254
MalI	GATC	2 cut(s)	53, 216
MboI	GATC	2 cut(s)	51, 214
MboII	GAAGA	3 cut(s)	27, 415, 437
MflI	RGATCY	1 cut(s)	214
MnlI	CCTC	4 cut(s)	28, 202, 294, 413
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	2 cut(s)	365, 393
MspI	CCGG	4 cut(s)	21, 120, 126, 134
MspR9I	CCNGG	1 cut(s)	22
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	51, 214
NlaIII	CATG	3 cut(s)	14, 43, 362
NlaIV	GGNNCC	5 cut(s)	27, 118, 124, 155, 216
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	220
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	108
PspN4I	GGNNCC	5 cut(s)	27, 118, 124, 155, 216
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	3 cut(s)	118, 124, 155
RsaNI	GTAC	3 cut(s)	117, 123, 154
SaqAI	TTAA	2 cut(s)	365, 393
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	51, 214
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	4 cut(s)	39, 213, 243, 257
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
SsiI	CCGC	2 cut(s)	107, 259
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	79, 116
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	418
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	365, 393
Tru9I	TTAA	2 cut(s)	365, 393
TspDTI	ATGAA	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.