AAA domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_11 | PF13086 | 437 - 474 | 1.7e-08 | AAA domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1512, 2705 |
| AarI | CACCTGC | 1 cut(s) | 330 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2636 |
| Acc36I | ACCTGC | 3 cut(s) | 330, 1336, 2379 |
| AccB1I | GGYRCC | 2 cut(s) | 860, 1639 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 644, 1777 |
| AccBSI | CCGCTC | 1 cut(s) | 380 |
| AccI | GTMKAC | 1 cut(s) | 2140 |
| AciI | CCGC | 4 cut(s) | 378, 1598, 1664, 2561 |
| AclWI | GGATC | 3 cut(s) | 575, 588, 1385 |
| AcoI | YGGCCR | 1 cut(s) | 1480 |
| AcsI | RAATTY | 8 cut(s) | 163, 283, 730, 1241, 1436, 1787, 1801, 2128 |
| AcvI | CACGTG | 1 cut(s) | 812 |
| AfaI | GTAC | 3 cut(s) | 1470, 1687, 1921 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 287, 644, 748, 1528, 1529, 1777, 2150 |
| AflIII | ACRYGT | 3 cut(s) | 809, 1180, 1263 |
| AhlI | ACTAGT | 1 cut(s) | 1486 |
| AjnI | CCWGG | 2 cut(s) | 863, 2143 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 426, 458, 1640, 1672 |
| Alw21I | GWGCWC | 2 cut(s) | 1315, 1521 |
| Alw26I | GTCTC | 7 cut(s) | 390, 758, 995, 2092, 2164, 2287, 2314 |
| Alw44I | GTGCAC | 1 cut(s) | 1517 |
| AlwI | GGATC | 3 cut(s) | 575, 588, 1385 |
| Ama87I | CYCGRG | 2 cut(s) | 918, 1187 |
| AoxI | GGCC | 2 cut(s) | 822, 1480 |
| ApaLI | GTGCAC | 1 cut(s) | 1517 |
| ApeKI | GCWGC | 5 cut(s) | 1452, 1702, 1732, 1873, 2183 |
| ApoI | RAATTY | 8 cut(s) | 163, 283, 730, 1241, 1436, 1787, 1801, 2128 |
| AseI | ATTAAT | 1 cut(s) | 908 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1182, 1758, 2032 |
| AspLEI | GCGC | 1 cut(s) | 1958 |
| AspS9I | GGNCC | 3 cut(s) | 278, 635, 822 |
| AsuHPI | GGTGA | 7 cut(s) | 302, 854, 1270, 1400, 1615, 1678, 2683 |
| AsuII | TTCGAA | 1 cut(s) | 168 |
| AvaI | CYCGRG | 2 cut(s) | 918, 1187 |
| AvaII | GGWCC | 2 cut(s) | 278, 635 |
| BaeGI | GKGCMC | 1 cut(s) | 1521 |
| BalI | TGGCCA | 1 cut(s) | 1482 |
| BamHI | GGATCC | 1 cut(s) | 580 |
| BanI | GGYRCC | 2 cut(s) | 860, 1639 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 45, 77, 1525, 1557 |
| BbrPI | CACGTG | 1 cut(s) | 812 |
| BbsI | GAAGAC | 2 cut(s) | 1173, 2373 |
| Bbv12I | GWGCWC | 2 cut(s) | 1315, 1521 |
| BbvI | GCAGC | 5 cut(s) | 1464, 1689, 1744, 1860, 2195 |
| BccI | CCATC | 5 cut(s) | 464, 646, 682, 1978, 2226 |
| BciT130I | CCWGG | 2 cut(s) | 865, 2145 |
| BciVI | GTATCC | 1 cut(s) | 401 |
| BclI | TGATCA | 1 cut(s) | 804 |
| BcoDI | GTCTC | 7 cut(s) | 390, 758, 995, 2092, 2164, 2287, 2314 |
| BcuI | ACTAGT | 1 cut(s) | 1486 |
| BfaI | CTAG | 8 cut(s) | 431, 714, 1431, 1487, 1590, 1736, 2709, 2803 |
| BfmI | CTRYAG | 3 cut(s) | 74, 1346, 2334 |
| BfuAI | ACCTGC | 3 cut(s) | 330, 1336, 2379 |
| BfuI | GTATCC | 1 cut(s) | 401 |
| BisI | GCNGC | 7 cut(s) | 378, 1453, 1599, 1703, 1733, 1874, 2184 |
| BlsI | GCNGC | 7 cut(s) | 379, 1454, 1600, 1704, 1734, 1875, 2185 |
| Bme1390I | CCNGG | 2 cut(s) | 865, 2145 |
| Bme18I | GGWCC | 2 cut(s) | 278, 635 |
| BmeT110I | CYCGRG | 2 cut(s) | 918, 1187 |
| BmgT120I | GGNCC | 3 cut(s) | 278, 635, 822 |
| BmiI | GGNNCC | 4 cut(s) | 582, 862, 1326, 1641 |
| BmrFI | CCNGG | 2 cut(s) | 865, 2145 |
| BmsI | GCATC | 3 cut(s) | 427, 866, 1120 |
| BpiI | GAAGAC | 2 cut(s) | 1173, 2373 |
| BpmI | CTGGAG | 2 cut(s) | 990, 2166 |
| Bpu10I | CCTNAGC | 2 cut(s) | 204, 2784 |
| Bpu14I | TTCGAA | 1 cut(s) | 168 |
| BpuEI | CTTGAG | 4 cut(s) | 515, 683, 1299, 2427 |
| Bsa29I | ATCGAT | 1 cut(s) | 874 |
| BsaAI | YACGTR | 1 cut(s) | 812 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1893 |
| BsaJI | CCNNGG | 1 cut(s) | 1274 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1637, 1667, 2139, 2169 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 287, 644, 748, 1528, 1529, 1777, 2150 |
| Bse1I | ACTGG | 5 cut(s) | 562, 781, 1059, 1771, 2598 |
| Bse3DI | GCAATG | 1 cut(s) | 679 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1893 |
| BseBI | CCWGG | 2 cut(s) | 865, 2145 |
| BseCI | ATCGAT | 1 cut(s) | 874 |
| BseDI | CCNNGG | 1 cut(s) | 1274 |
| BseGI | GGATG | 6 cut(s) | 472, 499, 1135, 1196, 1688, 2722 |
| BseJI | GATNNNNATC | 1 cut(s) | 1893 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 287, 644, 748, 1528, 1529, 1777, 2150 |
| BseMI | GCAATG | 1 cut(s) | 679 |
| BseMII | CTCAG | 4 cut(s) | 353, 599, 1437, 2775 |
| BseNI | ACTGG | 5 cut(s) | 562, 781, 1059, 1771, 2598 |
| BseSI | GKGCMC | 1 cut(s) | 1521 |
| BseXI | GCAGC | 5 cut(s) | 1464, 1689, 1744, 1860, 2195 |
| BsgI | GTGCAG | 4 cut(s) | 765, 1471, 2073, 2497 |
| BshFI | GGCC | 2 cut(s) | 824, 1482 |
| BshNI | GGYRCC | 2 cut(s) | 860, 1639 |
| BshVI | ATCGAT | 1 cut(s) | 874 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1315, 1521 |
| BsiHKCI | CYCGRG | 2 cut(s) | 918, 1187 |
| BsiSI | CCGG | 1 cut(s) | 1643 |
| BslFI | GGGAC | 3 cut(s) | 423, 2335, 2604 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 287, 644, 748, 1528, 1529, 1777, 2150 |
| BsmAI | GTCTC | 7 cut(s) | 390, 758, 995, 2092, 2164, 2287, 2314 |
| BsmFI | GGGAC | 3 cut(s) | 423, 2335, 2604 |
| BsmI | GAATGC | 2 cut(s) | 311, 2436 |
| BsnI | GGCC | 2 cut(s) | 824, 1482 |
| BsoBI | CYCGRG | 2 cut(s) | 918, 1187 |
| Bsp119I | TTCGAA | 1 cut(s) | 168 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1315, 1521 |
| Bsp1407I | TGTACA | 1 cut(s) | 1468 |
| Bsp143I | GATC | 8 cut(s) | 58, 268, 580, 804, 871, 937, 1390, 1894 |
| BspACI | CCGC | 4 cut(s) | 378, 1598, 1664, 2561 |
| BspANI | GGCC | 2 cut(s) | 824, 1482 |
| BspCNI | CTCAG | 4 cut(s) | 352, 598, 1438, 2776 |
| BspDI | ATCGAT | 1 cut(s) | 874 |
| BspHI | TCATGA | 1 cut(s) | 1609 |
| BspLI | GGNNCC | 4 cut(s) | 582, 862, 1326, 1641 |
| BspMAI | CTGCAG | 2 cut(s) | 78, 2338 |
| BspMI | ACCTGC | 3 cut(s) | 330, 1336, 2379 |
| BspPI | GGATC | 3 cut(s) | 575, 588, 1385 |
| BspT104I | TTCGAA | 1 cut(s) | 168 |
| BspT107I | GGYRCC | 2 cut(s) | 860, 1639 |
| BsrBI | CCGCTC | 1 cut(s) | 380 |
| BsrDI | GCAATG | 1 cut(s) | 679 |
| BsrGI | TGTACA | 1 cut(s) | 1468 |
| BsrI | ACTGG | 5 cut(s) | 562, 781, 1059, 1771, 2598 |
| BssECI | CCNNGG | 1 cut(s) | 1274 |
| BssMI | GATC | 8 cut(s) | 58, 268, 580, 804, 871, 937, 1390, 1894 |
| BssNAI | GTATAC | 1 cut(s) | 2141 |
| BssT1I | CCWWGG | 1 cut(s) | 1274 |
| Bst1107I | GTATAC | 1 cut(s) | 2141 |
| Bst2UI | CCWGG | 2 cut(s) | 865, 2145 |
| Bst4CI | ACNGT | 6 cut(s) | 248, 769, 1619, 1690, 1815, 2506 |
| Bst6I | CTCTTC | 1 cut(s) | 456 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1994 |
| BstAUI | TGTACA | 1 cut(s) | 1468 |
| BstBAI | YACGTR | 1 cut(s) | 812 |
| BstBI | TTCGAA | 1 cut(s) | 168 |
| BstC8I | GCNNGC | 4 cut(s) | 603, 1707, 2395, 2686 |
| BstDEI | CTNAG | 7 cut(s) | 204, 233, 339, 585, 1446, 2278, 2784 |
| BstF5I | GGATG | 6 cut(s) | 472, 499, 1135, 1196, 1688, 2722 |
| BstHHI | GCGC | 1 cut(s) | 1958 |
| BstKTI | GATC | 8 cut(s) | 61, 271, 583, 807, 874, 940, 1393, 1897 |
| BstMAI | GTCTC | 7 cut(s) | 390, 758, 995, 2092, 2164, 2287, 2314 |
| BstMBI | GATC | 8 cut(s) | 58, 268, 580, 804, 871, 937, 1390, 1894 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 238, 1732, 1994, 2390, 2739 |
| BstNI | CCWGG | 2 cut(s) | 865, 2145 |
| BstNSI | RCATGY | 2 cut(s) | 1267, 2767 |
| BstSCI | CCNGG | 2 cut(s) | 863, 2143 |
| BstSFI | CTRYAG | 3 cut(s) | 74, 1346, 2334 |
| BstSLI | GKGCMC | 1 cut(s) | 1521 |
| BstV1I | GCAGC | 5 cut(s) | 1464, 1689, 1744, 1860, 2195 |
| BstV2I | GAAGAC | 2 cut(s) | 1173, 2373 |
| BstX2I | RGATCY | 1 cut(s) | 580 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 794 |
| BstYI | RGATCY | 1 cut(s) | 580 |
| BstZ17I | GTATAC | 1 cut(s) | 2141 |
| Bsu15I | ATCGAT | 1 cut(s) | 874 |
| BsuI | GTATCC | 1 cut(s) | 401 |
| BsuRI | GGCC | 2 cut(s) | 824, 1482 |
| BsuTUI | ATCGAT | 1 cut(s) | 874 |
| BtsCI | GGATG | 6 cut(s) | 472, 499, 1135, 1196, 1688, 2722 |
| BtsI | GCAGTG | 2 cut(s) | 83, 2343 |
| BtsIMutI | CAGTG | 5 cut(s) | 83, 555, 2343, 2511, 2640 |
| BveI | ACCTGC | 3 cut(s) | 330, 1336, 2379 |
| Cac8I | GCNNGC | 4 cut(s) | 603, 1707, 2395, 2686 |
| CciI | TCATGA | 1 cut(s) | 1609 |
| CfoI | GCGC | 1 cut(s) | 1958 |
| Cfr13I | GGNCC | 3 cut(s) | 278, 635, 822 |
| ClaI | ATCGAT | 1 cut(s) | 874 |
| Csp6I | GTAC | 3 cut(s) | 1469, 1686, 1920 |
| CviQI | GTAC | 3 cut(s) | 1469, 1686, 1920 |
| DdeI | CTNAG | 7 cut(s) | 204, 233, 339, 585, 1446, 2278, 2784 |
| DpnI | GATC | 8 cut(s) | 60, 270, 582, 806, 873, 939, 1392, 1896 |
| DpnII | GATC | 8 cut(s) | 58, 268, 580, 804, 871, 937, 1390, 1894 |
| DraI | TTTAAA | 1 cut(s) | 1947 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2636 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2636 |
| EaeI | YGGCCR | 1 cut(s) | 1480 |
| Eam1104I | CTCTTC | 1 cut(s) | 456 |
| EarI | CTCTTC | 1 cut(s) | 456 |
| EciI | GGCGGA | 1 cut(s) | 2576 |
| Eco130I | CCWWGG | 1 cut(s) | 1274 |
| Eco47I | GGWCC | 2 cut(s) | 278, 635 |
| Eco72I | CACGTG | 1 cut(s) | 812 |
| Eco88I | CYCGRG | 2 cut(s) | 918, 1187 |
| EcoRI | GAATTC | 1 cut(s) | 1787 |
| EcoRII | CCWGG | 2 cut(s) | 863, 2143 |
| EcoT14I | CCWWGG | 1 cut(s) | 1274 |
| EcoT22I | ATGCAT | 1 cut(s) | 1379 |
| ErhI | CCWWGG | 1 cut(s) | 1274 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 491, 523 |
| FaqI | GGGAC | 3 cut(s) | 423, 2335, 2604 |
| FauNDI | CATATG | 4 cut(s) | 1728, 1999, 2119, 2586 |
| FbaI | TGATCA | 1 cut(s) | 804 |
| FblI | GTMKAC | 1 cut(s) | 2140 |
| Fnu4HI | GCNGC | 7 cut(s) | 378, 1453, 1599, 1703, 1733, 1874, 2184 |
| FokI | GGATG | 6 cut(s) | 479, 506, 1142, 1183, 1695, 2729 |
| Fsp4HI | GCNGC | 7 cut(s) | 378, 1453, 1599, 1703, 1733, 1874, 2184 |
| FspBI | CTAG | 8 cut(s) | 431, 714, 1431, 1487, 1590, 1736, 2709, 2803 |
| GlaI | GCGC | 1 cut(s) | 1957 |
| GluI | GCNGC | 7 cut(s) | 378, 1453, 1599, 1703, 1733, 1874, 2184 |
| GsuI | CTGGAG | 2 cut(s) | 990, 2166 |
| HaeIII | GGCC | 2 cut(s) | 824, 1482 |
| HapII | CCGG | 1 cut(s) | 1643 |
| HhaI | GCGC | 1 cut(s) | 1958 |
| Hin6I | GCGC | 1 cut(s) | 1956 |
| HinP1I | GCGC | 1 cut(s) | 1956 |
| HincII | GTYRAC | 3 cut(s) | 1210, 1500, 2577 |
| HindII | GTYRAC | 3 cut(s) | 1210, 1500, 2577 |
| HindIII | AAGCTT | 2 cut(s) | 599, 1231 |
| HinfI | GANTC | 7 cut(s) | 337, 1003, 1058, 2033, 2066, 2098, 2330 |
| HpaII | CCGG | 1 cut(s) | 1643 |
| HphI | GGTGA | 7 cut(s) | 302, 854, 1270, 1400, 1615, 1678, 2683 |
| HpyAV | CCTTC | 8 cut(s) | 193, 484, 607, 643, 977, 1551, 1833, 1946 |
| HpyCH4III | ACNGT | 6 cut(s) | 248, 769, 1619, 1690, 1815, 2506 |
| HpyCH4IV | ACGT | 2 cut(s) | 811, 1182 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 238, 1732, 1994, 2390, 2739 |
| HpyF3I | CTNAG | 7 cut(s) | 204, 233, 339, 585, 1446, 2278, 2784 |
| HpySE526I | ACGT | 2 cut(s) | 811, 1182 |
| HspAI | GCGC | 1 cut(s) | 1956 |
| Ksp22I | TGATCA | 1 cut(s) | 804 |
| Kzo9I | GATC | 8 cut(s) | 58, 268, 580, 804, 871, 937, 1390, 1894 |
| Lsp1109I | GCAGC | 5 cut(s) | 1464, 1689, 1744, 1860, 2195 |
| LweI | GCATC | 3 cut(s) | 427, 866, 1120 |
| MaeI | CTAG | 8 cut(s) | 431, 714, 1431, 1487, 1590, 1736, 2709, 2803 |
| MaeII | ACGT | 2 cut(s) | 811, 1182 |
| MaeIII | GTNAC | 6 cut(s) | 842, 2260, 2429, 2500, 2638, 2671 |
| MalI | GATC | 8 cut(s) | 60, 270, 582, 806, 873, 939, 1392, 1896 |
| MbiI | CCGCTC | 1 cut(s) | 380 |
| MboI | GATC | 8 cut(s) | 58, 268, 580, 804, 871, 937, 1390, 1894 |
| MfeI | CAATTG | 2 cut(s) | 1923, 2222 |
| MflI | RGATCY | 1 cut(s) | 580 |
| MhlI | GDGCHC | 2 cut(s) | 1315, 1521 |
| MlsI | TGGCCA | 1 cut(s) | 1482 |
| MluNI | TGGCCA | 1 cut(s) | 1482 |
| MlyI | GAGTC | 3 cut(s) | 331, 997, 2339 |
| MmeI | TCCRAC | 4 cut(s) | 424, 1322, 2061, 2497 |
| Mox20I | TGGCCA | 1 cut(s) | 1482 |
| Mph1103I | ATGCAT | 1 cut(s) | 1379 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1182, 1758, 2032 |
| MscI | TGGCCA | 1 cut(s) | 1482 |
| MseI | TTAA | 9 cut(s) | 87, 258, 908, 1229, 1842, 1946, 2021, 2402, 2471 |
| MslI | CAYNNNNRTG | 5 cut(s) | 792, 1884, 1947, 2315, 2747 |
| Msp20I | TGGCCA | 1 cut(s) | 1482 |
| MspA1I | CMGCKG | 2 cut(s) | 523, 1351 |
| MspI | CCGG | 1 cut(s) | 1643 |
| MspR9I | CCNGG | 2 cut(s) | 865, 2145 |
| MunI | CAATTG | 2 cut(s) | 1923, 2222 |
| Mva1269I | GAATGC | 2 cut(s) | 311, 2436 |
| MvaI | CCWGG | 2 cut(s) | 865, 2145 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 238, 1732, 1994, 2390, 2739 |
| NdeI | CATATG | 4 cut(s) | 1728, 1999, 2119, 2586 |
| NdeII | GATC | 8 cut(s) | 58, 268, 580, 804, 871, 937, 1390, 1894 |
| NlaIV | GGNNCC | 4 cut(s) | 582, 862, 1326, 1641 |
| NmuCI | GTSAC | 5 cut(s) | 842, 2260, 2429, 2638, 2671 |
| NsiI | ATGCAT | 1 cut(s) | 1379 |
| NspI | RCATGY | 2 cut(s) | 1267, 2767 |
| NspV | TTCGAA | 1 cut(s) | 168 |
| PaeR7I | CTCGAG | 1 cut(s) | 918 |
| PagI | TCATGA | 1 cut(s) | 1609 |
| PaqCI | CACCTGC | 1 cut(s) | 330 |
| PciI | ACATGT | 1 cut(s) | 1263 |
| PctI | GAATGC | 2 cut(s) | 311, 2436 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1182, 1758, 2032 |
| PfeI | GAWTC | 4 cut(s) | 1058, 2033, 2066, 2098 |
| PflFI | GACNNNGTC | 2 cut(s) | 340, 2084 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 644, 1777 |
| PkrI | GCNGC | 7 cut(s) | 379, 1454, 1600, 1704, 1734, 1875, 2185 |
| PleI | GAGTC | 3 cut(s) | 331, 997, 2338 |
| PmaCI | CACGTG | 1 cut(s) | 812 |
| PmlI | CACGTG | 1 cut(s) | 812 |
| PpsI | GAGTC | 3 cut(s) | 331, 997, 2338 |
| Ppu21I | YACGTR | 1 cut(s) | 812 |
| PscI | ACATGT | 1 cut(s) | 1263 |
| PshBI | ATTAAT | 1 cut(s) | 908 |
| PsiI | TTATAA | 2 cut(s) | 1512, 2705 |
| Psp6I | CCWGG | 2 cut(s) | 863, 2143 |
| PspCI | CACGTG | 1 cut(s) | 812 |
| PspGI | CCWGG | 2 cut(s) | 863, 2143 |
| PspN4I | GGNNCC | 4 cut(s) | 582, 862, 1326, 1641 |
| PspPI | GGNCC | 3 cut(s) | 278, 635, 822 |
| PspXI | VCTCGAGB | 1 cut(s) | 918 |
| PstI | CTGCAG | 2 cut(s) | 78, 2338 |
| PsuI | RGATCY | 1 cut(s) | 580 |
| PsyI | GACNNNGTC | 2 cut(s) | 340, 2084 |
| PvuII | CAGCTG | 2 cut(s) | 523, 1351 |
| RsaI | GTAC | 3 cut(s) | 1470, 1687, 1921 |
| RsaNI | GTAC | 3 cut(s) | 1469, 1686, 1920 |
| RseI | CAYNNNNRTG | 5 cut(s) | 792, 1884, 1947, 2315, 2747 |
| SaqAI | TTAA | 9 cut(s) | 87, 258, 908, 1229, 1842, 1946, 2021, 2402, 2471 |
| SatI | GCNGC | 7 cut(s) | 378, 1453, 1599, 1703, 1733, 1874, 2184 |
| Sau3AI | GATC | 8 cut(s) | 58, 268, 580, 804, 871, 937, 1390, 1894 |
| Sau96I | GGNCC | 3 cut(s) | 278, 635, 822 |
| SchI | GAGTC | 3 cut(s) | 331, 997, 2339 |
| ScrFI | CCNGG | 2 cut(s) | 865, 2145 |
| SduI | GDGCHC | 2 cut(s) | 1315, 1521 |
| SfaNI | GCATC | 3 cut(s) | 427, 866, 1120 |
| SfcI | CTRYAG | 3 cut(s) | 74, 1346, 2334 |
| Sfr274I | CTCGAG | 1 cut(s) | 918 |
| SfuI | TTCGAA | 1 cut(s) | 168 |
| SinI | GGWCC | 2 cut(s) | 278, 635 |
| SlaI | CTCGAG | 1 cut(s) | 918 |
| SmiI | ATTTAAAT | 1 cut(s) | 1947 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 792, 1884, 1947, 2315, 2747 |
| SmlI | CTYRAG | 5 cut(s) | 530, 662, 918, 1314, 2442 |
| SmoI | CTYRAG | 5 cut(s) | 530, 662, 918, 1314, 2442 |
| SpeI | ACTAGT | 1 cut(s) | 1486 |
| SsiI | CCGC | 4 cut(s) | 378, 1598, 1664, 2561 |
| SspMI | CTAG | 8 cut(s) | 431, 714, 1431, 1487, 1590, 1736, 2709, 2803 |
| StyD4I | CCNGG | 2 cut(s) | 863, 2143 |
| StyI | CCWWGG | 1 cut(s) | 1274 |
| SwaI | ATTTAAAT | 1 cut(s) | 1947 |
| TaaI | ACNGT | 6 cut(s) | 248, 769, 1619, 1690, 1815, 2506 |
| TaiI | ACGT | 2 cut(s) | 814, 1185 |
| TaqI | TCGA | 3 cut(s) | 168, 874, 919 |
| TatI | WGTACW | 3 cut(s) | 1468, 1685, 1919 |
| TauI | GCSGC | 2 cut(s) | 380, 1601 |
| TfiI | GAWTC | 4 cut(s) | 1058, 2033, 2066, 2098 |
| Tru1I | TTAA | 9 cut(s) | 87, 258, 908, 1229, 1842, 1946, 2021, 2402, 2471 |
| Tru9I | TTAA | 9 cut(s) | 87, 258, 908, 1229, 1842, 1946, 2021, 2402, 2471 |
| TscAI | CASTG | 5 cut(s) | 83, 562, 2343, 2511, 2647 |
| TseFI | GTSAC | 5 cut(s) | 842, 2260, 2429, 2638, 2671 |
| TseI | GCWGC | 5 cut(s) | 1452, 1702, 1732, 1873, 2183 |
| Tsp45I | GTSAC | 5 cut(s) | 842, 2260, 2429, 2638, 2671 |
| TspGWI | ACGGA | 1 cut(s) | 731 |
| TspRI | CASTG | 5 cut(s) | 83, 562, 2343, 2511, 2647 |
| Tth111I | GACNNNGTC | 2 cut(s) | 340, 2084 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 644, 1777 |
| VneI | GTGCAC | 1 cut(s) | 1517 |
| VpaK11BI | GGWCC | 2 cut(s) | 278, 635 |
| VspI | ATTAAT | 1 cut(s) | 908 |
| XapI | RAATTY | 8 cut(s) | 163, 283, 730, 1241, 1436, 1787, 1801, 2128 |
| XbaI | TCTAGA | 1 cut(s) | 430 |
| XceI | RCATGY | 2 cut(s) | 1267, 2767 |
| XhoI | CTCGAG | 1 cut(s) | 918 |
| XmiI | GTMKAC | 1 cut(s) | 2140 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1182, 1758, 2032 |
| XspI | CTAG | 8 cut(s) | 431, 714, 1431, 1487, 1590, 1736, 2709, 2803 |
| Zsp2I | ATGCAT | 1 cut(s) | 1379 |