Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8150836.1

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 541

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8150836.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 331 bp

atgacaaataagctttgtgagaaattgctaaaggagaaggatcaacatcgtgacattgccagcatagctatgaaggctattgttgcagaagtttctactcaatcacttgcacagtctattcttgtgtctattttacctcagttgattaaaggaattactgccccaggaatgagcacagagataaaatgtgaatgtcttgatatcttatgtgatgtccttcataagtttggcaatcttatggcaaccgaccatgagctactattaggtgctctcttgtctcagttgagttccaatcaggccagcgtgaggaagaaaactgtgtcatgcatcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

110

Amino Acids

11.95

Weight (kDa)

7.64

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	306
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	3 cut(s)	13, 68, 256
AluI	AGCT	3 cut(s)	13, 68, 256
Alw21I	GWGCWC	2 cut(s)	176, 271
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	176, 271
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	282
Bme1390I	CCNGG	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	163
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	152, 293
BshFI	GGCC	1 cut(s)	299
BsiHKAI	GWGCWC	2 cut(s)	176, 271
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	176, 271
Bsp143I	GATC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	151, 292
BspPI	GGATC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	114, 319
BstC8I	GCNNGC	2 cut(s)	61, 301
BstDEI	CTNAG	2 cut(s)	138, 279
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 74, 83
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	61, 301
CviAII	CATG	2 cut(s)	251, 324
CviJI	RGCY	5 cut(s)	13, 68, 77, 256, 299
CviKI_1	RGCY	5 cut(s)	13, 68, 77, 256, 299
DdeI	CTNAG	2 cut(s)	138, 279
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	329
FaeI	CATG	2 cut(s)	254, 327
FaiI	YATR	7 cut(s)	65, 71, 208, 222, 239, 252, 325
FatI	CATG	2 cut(s)	250, 323
HaeIII	GGCC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	254, 327
HindIII	AAGCTT	1 cut(s)	11
Hpy188III	TCNNGA	2 cut(s)	50, 197
HpyAV	CCTTC	3 cut(s)	31, 67, 227
HpyCH4III	ACNGT	2 cut(s)	114, 319
HpyCH4V	TGCA	3 cut(s)	86, 110, 327
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 74, 83
HpyF3I	CTNAG	2 cut(s)	138, 279
Hsp92II	CATG	2 cut(s)	254, 327
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	73, 150, 177, 281, 313
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	176, 271
MluCI	AATT	2 cut(s)	23, 153
MnlI	CCTC	2 cut(s)	147, 300
Mph1103I	ATGCAT	1 cut(s)	329
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	65, 74, 83
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	254, 327
NmuCI	GTSAC	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	176, 271
SetI	ASST	5 cut(s)	15, 70, 139, 258, 268
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	23, 153
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	114, 319
TasI	AATT	2 cut(s)	23, 153
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	86, 209
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.