FvH4_7g28392

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
21043833 .. 21045500
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28392.t1

Sequence Viewer

Length: 1668 bp
ATGTGTTGTGGAAGTGTGAATGGTGAATGGGATAACTTACTTGCGGGTGGTTCATCTGTTACATTGCTCACCAAGGATATATGTAATGTTCTGTGGGTGAGTTCTGATGCACTAAAGCTAATCCAATATGGGTTGGGGACTGCAGTTGTTTTTGTGAAGGATAAACCACCTGATATTGTGGGTAATAGTTATGAGAGCATACGAGCGAATTCTAAAAGGGTACTGGAGTTAATATTGGAGAAGTGGAAATCAAGAGGTACTGCCGAAACAGTTATTGGCTTGCAGTGTTGCTATTGTGAGGCAGAGGAGATTCTACTCTCTTGCAGGGAAGCATTCAACATAATTGGTGAAATGACTCAAACCACCTCATTGTCCCAGGTATCCACTGTAAATTTTCAAGATGATAGACGAGATTTTGTGAGTTTCTTTTGTGACATGATTAAGCTGTATGTCGTGATCTTTAGTGCTTTTATTGATAATGCTGGAAGTTCGCTTCATGCTGATATATTCGAGATAAATGGATCTATTGCTAGCTCTCTTGTTGATATGTATGCCCACTGTGGAGTAGATATAGAAGAGACTGTTTTTTACTTGATGATATCCAGGGGTTTAGGGAATATGGGTCCGATTATTAGTTCAGTGGCTGACTCCTCAAATAAGAACTCATTTTCAGTTGAGGTTGTTGGGGTTTTTGCTTGGGATGGTGATCCAGGGTCTTCACACATCAAAAGGGCCAAGGCCGAGATGTCAACTATTTGTGTTTTGGACTATGAGAATGGGTTTAGTGCAACAGAAGTGCCCCAGTTTGGTGGAATTGATTTTGGCCAGGGGTTTTCAAGTGATGAAATGCATAGGTCTGGATTCATGTTATATGGGTTGGGGTCAATGAAGAATTTTGCTACTCCACATGAAGTTATTGCTGTCTCTTGGAATGTTAATTTGCTGGCAGCATATGTCAAGTCTGGATATATATATAGCGGCCATCAATTGTGGGGTGATAACACATATGTCATCTCATTCTCAAATGTGACTTCATGGAATCACATATTCTGTTGCTATTTCCATAATGAGATCAACATGGAGGTAAAAAATATAATTAATAGCATACAAGAAGTTGTTGTTTGCTGGAACTATATGATAGCAGGGAATTCACTCAATTCTCAACATGAGGTGATTACCATGCAAATTTCCTATGCTACTATACTGCTGAGTTGCTGTGCAAAGCTTGCTTATTCATCTCCAGGGAAACATGTTCATGTCCGGTTACGTTTAACAAAATTTGGATATGTGAATGATGCCTTAGTTGAGTTTCATGATCAAATGTCCCCACGATACAAGTCAAAGATAATGAAGTATCTCAGAGAGCATCTGAAATCATCAAGTGAGCTCTTACTTCCTCATGTGATTCAACTCTCTTTGGTGGAATCTACTTATCAAAGTAAATTGGTGATGACTTTATGCACTAGTTTATTGGATGAGCTTTACAACAGAGGAATTGGATTTAGCCATATTGCAACATCCATGCAGAGTGTATCAATTGGAAATGGTTCTATGCTTGTGCTATTGCAACTGGTTTGGTTGATGTTAGAAAAACTTTTCAAGTGTGAGCACAAGGAAAATGTATTTACCAGTTTCGAGCTACTGTTGACTAACCAATTTATCATATAG

Protein Analysis

556

Amino Acids

61.91

Weight (kDa)

5.46

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 978
AclWI GGATC 2 cut(s) 529, 701
AcoI YGGCCR 2 cut(s) 823, 979
AcsI RAATTY 6 cut(s) 208, 391, 892, 1147, 1185, 1277
AfaI GTAC 2 cut(s) 222, 259
AfiI CCNNNNNNNGG 1 cut(s) 806
AflIII ACRYGT 1 cut(s) 1249
AgsI TTSAA 5 cut(s) 337, 398, 837, 1409, 1600
AhlI ACTAGT 1 cut(s) 1463
AjnI CCWGG 5 cut(s) 375, 602, 709, 825, 1240
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 7 cut(s) 118, 445, 534, 1225, 1387, 1480, 1639
AluI AGCT 7 cut(s) 118, 445, 534, 1225, 1387, 1480, 1639
Alw21I GWGCWC 2 cut(s) 1389, 1611
Alw26I GTCTC 2 cut(s) 572, 928
AlwI GGATC 2 cut(s) 529, 701
AlwNI CAGNNNCTG 1 cut(s) 644
AoxI GGCC 4 cut(s) 732, 738, 823, 979
ApeKI GCWGC 1 cut(s) 947
ApoI RAATTY 6 cut(s) 208, 391, 892, 1147, 1185, 1277
AseI ATTAAT 1 cut(s) 1098
Asp700I GAANNNNTTC 1 cut(s) 1546
AspS9I GGNCC 2 cut(s) 623, 732
AsuHPI GGTGA 8 cut(s) 35, 61, 109, 359, 716, 1007, 1183, 1459
AsuNHI GCTAGC 1 cut(s) 530
AvaII GGWCC 1 cut(s) 623
BaeGI GKGCMC 1 cut(s) 801
BaeI ACNNNNGTAYC 2 cut(s) 212, 245
BalI TGGCCA 1 cut(s) 825
BanII GRGCYC 1 cut(s) 1389
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 2 cut(s) 1389, 1611
BbvI GCAGC 1 cut(s) 959
BccI CCATC 2 cut(s) 695, 990
BciT130I CCWGG 5 cut(s) 377, 604, 711, 827, 1242
BciVI GTATCC 1 cut(s) 391
BclI TGATCA 1 cut(s) 1315
BcoDI GTCTC 2 cut(s) 572, 928
BcuI ACTAGT 1 cut(s) 1463
BfaI CTAG 2 cut(s) 531, 1464
BfmI CTRYAG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 391
BisI GCNGC 2 cut(s) 948, 979
BlsI GCNGC 2 cut(s) 949, 980
Bme1390I CCNGG 5 cut(s) 377, 604, 711, 827, 1242
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 2 cut(s) 623, 732
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 5 cut(s) 377, 604, 711, 827, 1242
BmrI ACTGGG 1 cut(s) 796
BmsI GCATC 3 cut(s) 97, 1285, 1375
BmtI GCTAGC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 796
BpiI GAAGAC 1 cut(s) 708
BpmI CTGGAG 2 cut(s) 245, 1224
BsaBI GATNNNNATC 1 cut(s) 705
BsaJI CCNNGG 7 cut(s) 72, 375, 603, 710, 735, 826, 1241
BsaWI WCCGGW 1 cut(s) 1260
Bsc4I CCNNNNNNNGG 1 cut(s) 806
Bse1I ACTGG 4 cut(s) 228, 802, 1575, 1629
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 5 cut(s) 377, 604, 711, 827, 1242
BseDI CCNNGG 7 cut(s) 72, 375, 603, 710, 735, 826, 1241
BseGI GGATG 3 cut(s) 706, 1480, 1517
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 1199, 1372
BseNI ACTGG 4 cut(s) 228, 802, 1575, 1629
BseRI GAGGAG 2 cut(s) 320, 640
BseSI GKGCMC 1 cut(s) 801
BseXI GCAGC 1 cut(s) 959
BshFI GGCC 4 cut(s) 734, 740, 825, 981
BsiHKAI GWGCWC 2 cut(s) 1389, 1611
BsiSI CCGG 1 cut(s) 1261
BslFI GGGAC 3 cut(s) 151, 358, 1309
BslI CCNNNNNNNGG 1 cut(s) 806
BsmAI GTCTC 2 cut(s) 572, 928
BsmFI GGGAC 3 cut(s) 151, 358, 1309
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 4 cut(s) 734, 740, 825, 981
Bsp1286I GDGCHC 3 cut(s) 801, 1389, 1611
Bsp143I GATC 5 cut(s) 456, 521, 706, 1071, 1315
BspACI CCGC 2 cut(s) 44, 978
BspANI GGCC 4 cut(s) 734, 740, 825, 981
BspCNI CTCAG 2 cut(s) 1200, 1371
BspHI TCATGA 1 cut(s) 1312
BspLI GGNNCC 1 cut(s) 624
BspMAI CTGCAG 1 cut(s) 145
BspOI GCTAGC 1 cut(s) 534
BspPI GGATC 2 cut(s) 529, 701
BsrDI GCAATG 1 cut(s) 62
BsrI ACTGG 4 cut(s) 228, 802, 1575, 1629
BssECI CCNNGG 7 cut(s) 72, 375, 603, 710, 735, 826, 1241
BssMI GATC 5 cut(s) 456, 521, 706, 1071, 1315
BssT1I CCWWGG 2 cut(s) 72, 735
Bst2UI CCWGG 5 cut(s) 377, 604, 711, 827, 1242
Bst4CI ACNGT 5 cut(s) 271, 388, 560, 583, 1644
Bst6I CTCTTC 1 cut(s) 570
BstAPI GCANNNNNTGC 1 cut(s) 1226
BstC8I GCNNGC 4 cut(s) 281, 532, 945, 1227
BstDEI CTNAG 3 cut(s) 1208, 1300, 1358
BstF5I GGATG 3 cut(s) 706, 1480, 1517
BstKTI GATC 5 cut(s) 459, 524, 709, 1074, 1318
BstMAI GTCTC 2 cut(s) 572, 928
BstMBI GATC 5 cut(s) 456, 521, 706, 1071, 1315
BstMWI GCNNNNNNNGC 1 cut(s) 1226
BstNI CCWGG 5 cut(s) 377, 604, 711, 827, 1242
BstNSI RCATGY 1 cut(s) 1253
BstSCI CCNGG 5 cut(s) 375, 602, 709, 825, 1240
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 801
BstV1I GCAGC 1 cut(s) 959
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 521
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 1 cut(s) 521
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 4 cut(s) 734, 740, 825, 981
BtsCI GGATG 3 cut(s) 706, 1480, 1517
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 4 cut(s) 290, 384, 556, 645
Cac8I GCNNGC 4 cut(s) 281, 532, 945, 1227
CaiI CAGNNNCTG 1 cut(s) 644
CciI TCATGA 1 cut(s) 1312
Cfr13I GGNCC 2 cut(s) 623, 732
Csp6I GTAC 2 cut(s) 221, 258
CviQI GTAC 2 cut(s) 221, 258
DdeI CTNAG 3 cut(s) 1208, 1300, 1358
DpnI GATC 5 cut(s) 458, 523, 708, 1073, 1317
DpnII GATC 5 cut(s) 456, 521, 706, 1071, 1315
EaeI YGGCCR 2 cut(s) 823, 979
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 1387
Eco130I CCWWGG 2 cut(s) 72, 735
Eco24I GRGCYC 1 cut(s) 1389
Eco32I GATATC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 623
Eco53kI GAGCTC 1 cut(s) 1387
EcoICRI GAGCTC 1 cut(s) 1387
EcoRI GAATTC 2 cut(s) 208, 1147
EcoRII CCWGG 5 cut(s) 375, 602, 709, 825, 1240
EcoRV GATATC 1 cut(s) 600
EcoT14I CCWWGG 2 cut(s) 72, 735
EcoT22I ATGCAT 1 cut(s) 852
EcoT38I GRGCYC 1 cut(s) 1389
ErhI CCWWGG 2 cut(s) 72, 735
FaqI GGGAC 3 cut(s) 151, 358, 1309
FauI CCCGC 1 cut(s) 37
FauNDI CATATG 2 cut(s) 952, 1006
FbaI TGATCA 1 cut(s) 1315
Fnu4HI GCNGC 2 cut(s) 948, 979
FokI GGATG 3 cut(s) 713, 1487, 1504
FriOI GRGCYC 1 cut(s) 1389
Fsp4HI GCNGC 2 cut(s) 948, 979
FspBI CTAG 2 cut(s) 531, 1464
GluI GCNGC 2 cut(s) 948, 979
GsuI CTGGAG 2 cut(s) 245, 1224
HaeIII GGCC 4 cut(s) 734, 740, 825, 981
HapII CCGG 1 cut(s) 1261
HincII GTYRAC 2 cut(s) 750, 1647
HindII GTYRAC 2 cut(s) 750, 1647
HindIII AAGCTT 1 cut(s) 1223
HinfI GANTC 7 cut(s) 310, 355, 647, 861, 1039, 1405, 1424
HpaII CCGG 1 cut(s) 1261
HphI GGTGA 8 cut(s) 35, 61, 109, 359, 716, 1007, 1183, 1459
Hpy166II GTNNAC 2 cut(s) 750, 1647
Hpy188I TCNGA 4 cut(s) 106, 627, 1361, 1371
Hpy188III TCNNGA 7 cut(s) 252, 398, 454, 511, 858, 963, 1313
Hpy8I GTNNAC 2 cut(s) 750, 1647
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 5 cut(s) 271, 388, 560, 583, 1644
HpyCH4IV ACGT 1 cut(s) 1267
HpyF10VI GCNNNNNNNGC 1 cut(s) 1226
HpyF3I CTNAG 3 cut(s) 1208, 1300, 1358
HpySE526I ACGT 1 cut(s) 1267
Ksp22I TGATCA 1 cut(s) 1315
Kzo9I GATC 5 cut(s) 456, 521, 706, 1071, 1315
Lsp1109I GCAGC 1 cut(s) 959
LweI GCATC 3 cut(s) 97, 1285, 1375
MaeI CTAG 2 cut(s) 531, 1464
MaeII ACGT 1 cut(s) 1267
MaeIII GTNAC 4 cut(s) 58, 431, 1027, 1263
MalI GATC 5 cut(s) 458, 523, 708, 1073, 1317
MboI GATC 5 cut(s) 456, 521, 706, 1071, 1315
MboII GAAGA 3 cut(s) 587, 708, 901
MfeI CAATTG 2 cut(s) 986, 1536
MflI RGATCY 1 cut(s) 521
MhlI GDGCHC 3 cut(s) 801, 1389, 1611
MlsI TGGCCA 1 cut(s) 825
MluNI TGGCCA 1 cut(s) 825
MlyI GAGTC 2 cut(s) 349, 641
Mox20I TGGCCA 1 cut(s) 825
Mph1103I ATGCAT 1 cut(s) 852
MroXI GAANNNNTTC 1 cut(s) 1546
MscI TGGCCA 1 cut(s) 825
MseI TTAA 5 cut(s) 230, 441, 936, 1098, 1271
MslI CAYNNNNRTG 1 cut(s) 1254
Msp20I TGGCCA 1 cut(s) 825
MspI CCGG 1 cut(s) 1261
MspR9I CCNGG 5 cut(s) 377, 604, 711, 827, 1242
MunI CAATTG 2 cut(s) 986, 1536
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 5 cut(s) 377, 604, 711, 827, 1242
MwoI GCNNNNNNNGC 1 cut(s) 1226
NdeI CATATG 2 cut(s) 952, 1006
NdeII GATC 5 cut(s) 456, 521, 706, 1071, 1315
NheI GCTAGC 1 cut(s) 530
NlaIV GGNNCC 1 cut(s) 624
NmeAIII GCCGAG 1 cut(s) 766
NmuCI GTSAC 2 cut(s) 431, 1027
NsiI ATGCAT 1 cut(s) 852
NspI RCATGY 1 cut(s) 1253
PagI TCATGA 1 cut(s) 1312
PciI ACATGT 1 cut(s) 1249
PctI GAATGC 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 1546
PfeI GAWTC 5 cut(s) 310, 861, 1039, 1405, 1424
PkrI GCNGC 2 cut(s) 949, 980
PleI GAGTC 2 cut(s) 349, 641
PpsI GAGTC 2 cut(s) 349, 641
PscI ACATGT 1 cut(s) 1249
PshBI ATTAAT 1 cut(s) 1098
Psp124BI GAGCTC 1 cut(s) 1389
Psp6I CCWGG 5 cut(s) 375, 602, 709, 825, 1240
PspGI CCWGG 5 cut(s) 375, 602, 709, 825, 1240
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 2 cut(s) 623, 732
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 644
PsuI RGATCY 1 cut(s) 521
RsaI GTAC 2 cut(s) 222, 259
RsaNI GTAC 2 cut(s) 221, 258
RseI CAYNNNNRTG 1 cut(s) 1254
SacI GAGCTC 1 cut(s) 1389
SaqAI TTAA 5 cut(s) 230, 441, 936, 1098, 1271
SatI GCNGC 2 cut(s) 948, 979
Sau3AI GATC 5 cut(s) 456, 521, 706, 1071, 1315
Sau96I GGNCC 2 cut(s) 623, 732
SchI GAGTC 2 cut(s) 349, 641
ScrFI CCNGG 5 cut(s) 377, 604, 711, 827, 1242
SduI GDGCHC 3 cut(s) 801, 1389, 1611
SfaNI GCATC 3 cut(s) 97, 1285, 1375
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 1254
SpeI ACTAGT 1 cut(s) 1463
SsiI CCGC 2 cut(s) 44, 978
SspI AATATT 1 cut(s) 234
SspMI CTAG 2 cut(s) 531, 1464
SstI GAGCTC 1 cut(s) 1389
StyD4I CCNGG 5 cut(s) 375, 602, 709, 825, 1240
StyI CCWWGG 2 cut(s) 72, 735
TaaI ACNGT 5 cut(s) 271, 388, 560, 583, 1644
TaiI ACGT 1 cut(s) 1270
TaqI TCGA 2 cut(s) 510, 1635
TauI GCSGC 1 cut(s) 981
TfiI GAWTC 5 cut(s) 310, 861, 1039, 1405, 1424
Tru1I TTAA 5 cut(s) 230, 441, 936, 1098, 1271
Tru9I TTAA 5 cut(s) 230, 441, 936, 1098, 1271
TscAI CASTG 4 cut(s) 290, 391, 563, 645
TseFI GTSAC 2 cut(s) 431, 1027
TseI GCWGC 1 cut(s) 947
Tsp45I GTSAC 2 cut(s) 431, 1027
TspRI CASTG 4 cut(s) 290, 391, 563, 645
VpaK11BI GGWCC 1 cut(s) 623
VspI ATTAAT 1 cut(s) 1098
XapI RAATTY 6 cut(s) 208, 391, 892, 1147, 1185, 1277
XceI RCATGY 1 cut(s) 1253
XmnI GAANNNNTTC 1 cut(s) 1546
XspI CTAG 2 cut(s) 531, 1464
Zsp2I ATGCAT 1 cut(s) 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.