Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

27625375 .. 27629098

Gene Structure 3724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44651

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAATACAGAGATAAAATGTGAATGTCCTGATATCTTATGCTATGCCCTTCATAAGTTTGGCGATATTATGGCAACCGACCATGAGCTGCTGTTGGGTGCTCTCTTGTCTCAGTTGAGCTCCAATCAGAAAAACGTGAGTAAGAAAAGTGTGTCATGCATCGCATCACTTGCTTCAAGCTTGTCAGATGATTTGTTGGCAAAAGCTACCGTTAGAGTTGTTCAGCACTTGAGCAATAAAGGCGCAAAATATAAAATGACTCAAACCTCTTTGTCTCAGAACAAATCGGAGAAAATGAGTTTGTTGTTTGCTGATAAGTTTGAGAAAATGGAAGGGAATGCCAGAATGATGTTCGATGACATTTGGGGAAGATGGAAATCTCAAATCACTTTTGGAACTTCAGTAGGCATGATTTGTGTCATAGAGTTTAATGAGGATTTCTTTGGATGTTATATGGTGTTAGATAAGAAGTGGTTGGGAGAGACAATTTGTAATCTGCACCTTTGCATGTCATCTTTGGATTTGAATTTACTGCAAGTTCCAGTTCATTTAAGTAACAGAGCCTTTGGCTTTACACGTGAGTGGCATCTTGGAAACATAATTTGGAATATAGCAGGTAATGCACAGAAGCTATTTGTTGCTATGCATGGCAGAATTGAAGCTCTTGTCATTGATCAGGAAAACAATTTTCAGTGGGTTGATTCTTATCTTGATATGGTTATTGGTCTTTTCAAAAATGATTTCAGCTCATCTCCTTCAAGGAATAAGGAGGGCCTCATATTAGTTTTAGGTCTTAGTAGTGGAACAATTGAGGTATCTTATTTGGAGATATCTAATGGTGTTTTTGAGGTGATGGCAGTAAGCTGTGAGTCACTTGGAGGAGAGGATTCTGACCATGCTCGGCTGAACTTCATAGTGAGTAAATTCGCTATAATTAAATTCACTGTTAGCTTACCTTACTTGAGACCTACTTGGTGCATGTCTAAGCTTGTAACTTCTGGTAGTGTTGCTCTCTATCATGGATACAATGAACACAAGCGATTCAAATGTGTCAACAATATCAAGATATCACTTCTAGTGGGGATTATTTGGATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

366

Amino Acids

41.13

Weight (kDa)

7.11

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	242 - 310	4.6e-09	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AclWI	GGATC	1 cut(s)	1100
AcsI	RAATTY	3 cut(s)	526, 923, 938
AcuI	CTGAAG	1 cut(s)	384
AcvI	CACGTG	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	575
AgsI	TTSAA	6 cut(s)	177, 526, 659, 733, 759, 1045
AjuI	GAANNNNNNNTTGG	2 cut(s)	586, 618
AleI	CACNNNNGTG	1 cut(s)	580
Alw21I	GWGCWC	2 cut(s)	103, 122
Alw26I	GTCTC	4 cut(s)	114, 279, 476, 958
AlwI	GGATC	1 cut(s)	1100
AoxI	GGCC	1 cut(s)	772
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	3 cut(s)	526, 923, 938
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	772
AsuHPI	GGTGA	1 cut(s)	862
BanII	GRGCYC	1 cut(s)	122
BbrPI	CACGTG	1 cut(s)	578
Bbv12I	GWGCWC	2 cut(s)	103, 122
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	2 cut(s)	366, 847
BciVI	GTATCC	1 cut(s)	1016
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	4 cut(s)	114, 279, 476, 958
BfaI	CTAG	1 cut(s)	1076
BfuAI	ACCTGC	1 cut(s)	605
BfuI	GTATCC	1 cut(s)	1016
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	772
BmsI	GCATC	3 cut(s)	168, 173, 595
BpuEI	CTTGAG	2 cut(s)	250, 982
BsaAI	YACGTR	1 cut(s)	578
BsaBI	GATNNNNATC	2 cut(s)	376, 705
BsaI	GGTCTC	1 cut(s)	958
Bse1I	ACTGG	1 cut(s)	542
Bse8I	GATNNNNATC	2 cut(s)	376, 705
BseGI	GGATG	1 cut(s)	452
BseJI	GATNNNNATC	2 cut(s)	376, 705
BseMII	CTCAG	2 cut(s)	125, 290
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	894
BseXI	GCAGC	1 cut(s)	75
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	774
BsiHKAI	GWGCWC	2 cut(s)	103, 122
BsmAI	GTCTC	4 cut(s)	114, 279, 476, 958
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	774
Bso31I	GGTCTC	1 cut(s)	958
Bsp1286I	GDGCHC	2 cut(s)	103, 122
Bsp143I	GATC	2 cut(s)	673, 1092
BspANI	GGCC	1 cut(s)	774
BspCNI	CTCAG	2 cut(s)	124, 289
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	1 cut(s)	1100
BspTNI	GGTCTC	1 cut(s)	958
BsrI	ACTGG	1 cut(s)	542
BssMI	GATC	2 cut(s)	673, 1092
Bst4CI	ACNGT	2 cut(s)	211, 946
BstAPI	GCANNNNNTGC	2 cut(s)	170, 620
BstBAI	YACGTR	1 cut(s)	578
BstDEI	CTNAG	4 cut(s)	111, 276, 794, 984
BstF5I	GGATG	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	2 cut(s)	676, 1095
BstMAI	GTCTC	4 cut(s)	114, 279, 476, 958
BstMBI	GATC	2 cut(s)	673, 1092
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 240, 620
BstNSI	RCATGY	2 cut(s)	511, 982
BstV1I	GCAGC	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	1016
BsuRI	GGCC	1 cut(s)	774
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	452
BtsIMutI	CAGTG	2 cut(s)	698, 942
BveI	ACCTGC	1 cut(s)	605
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	772
CviAII	CATG	8 cut(s)	83, 156, 409, 508, 647, 896, 979, 1019
DdeI	CTNAG	4 cut(s)	111, 276, 794, 984
DpnI	GATC	2 cut(s)	675, 1094
DpnII	GATC	2 cut(s)	673, 1092
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	958
Eco32I	GATATC	3 cut(s)	34, 831, 1068
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	384
Eco72I	CACGTG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRV	GATATC	3 cut(s)	34, 831, 1068
EcoT22I	ATGCAT	2 cut(s)	161, 648
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	8 cut(s)	86, 159, 412, 511, 650, 899, 982, 1022
FatI	CATG	8 cut(s)	82, 155, 408, 507, 646, 895, 978, 1018
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	1076
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	774
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	8 cut(s)	86, 159, 412, 511, 650, 899, 982, 1022
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HindIII	AAGCTT	2 cut(s)	178, 986
HinfI	GANTC	5 cut(s)	259, 701, 869, 887, 1041
HphI	GGTGA	1 cut(s)	862
Hpy166II	GTNNAC	1 cut(s)	1054
Hpy188I	TCNGA	5 cut(s)	129, 187, 279, 289, 892
Hpy188III	TCNNGA	4 cut(s)	29, 677, 710, 1063
Hpy8I	GTNNAC	1 cut(s)	1054
HpyAV	CCTTC	3 cut(s)	59, 326, 765
HpyCH4III	ACNGT	2 cut(s)	211, 946
HpyCH4IV	ACGT	2 cut(s)	135, 577
HpyCH4V	TGCA	7 cut(s)	159, 499, 507, 535, 623, 646, 978
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 240, 620
HpyF3I	CTNAG	4 cut(s)	111, 276, 794, 984
HpySE526I	ACGT	2 cut(s)	135, 577
Hsp92II	CATG	8 cut(s)	86, 159, 412, 511, 650, 899, 982, 1022
HspAI	GCGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	2 cut(s)	673, 1092
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	7 cut(s)	42, 355, 555, 600, 662, 984, 1081
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	3 cut(s)	168, 173, 595
MaeI	CTAG	1 cut(s)	1076
MaeII	ACGT	2 cut(s)	135, 577
MaeIII	GTNAC	3 cut(s)	554, 870, 991
MalI	GATC	2 cut(s)	675, 1094
MboI	GATC	2 cut(s)	673, 1092
MboII	GAAGA	1 cut(s)	381
MfeI	CAATTG	1 cut(s)	807
MhlI	GDGCHC	2 cut(s)	103, 122
MluCI	AATT	9 cut(s)	486, 526, 600, 654, 685, 807, 923, 933, 938
MlyI	GAGTC	2 cut(s)	253, 878
MnlI	CCTC	8 cut(s)	277, 427, 763, 785, 805, 841, 872, 877
Mph1103I	ATGCAT	2 cut(s)	161, 648
MseI	TTAA	3 cut(s)	429, 551, 936
MslI	CAYNNNNRTG	1 cut(s)	580
MunI	CAATTG	1 cut(s)	807
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	3 cut(s)	170, 240, 620
NdeII	GATC	2 cut(s)	673, 1092
NlaIII	CATG	8 cut(s)	86, 159, 412, 511, 650, 899, 982, 1022
NmeAIII	GCCGAG	1 cut(s)	880
NmuCI	GTSAC	1 cut(s)	870
NsiI	ATGCAT	2 cut(s)	161, 648
NspI	RCATGY	2 cut(s)	511, 982
OliI	CACNNNNGTG	1 cut(s)	580
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	3 cut(s)	701, 887, 1041
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	2 cut(s)	253, 877
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
PpsI	GAGTC	2 cut(s)	253, 877
Ppu21I	YACGTR	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	122
PspCI	CACGTG	1 cut(s)	578
PspPI	GGNCC	1 cut(s)	772
RseI	CAYNNNNRTG	1 cut(s)	580
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	429, 551, 936
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	2 cut(s)	673, 1092
Sau96I	GGNCC	1 cut(s)	772
SchI	GAGTC	2 cut(s)	253, 878
SduI	GDGCHC	2 cut(s)	103, 122
SfaNI	GCATC	3 cut(s)	168, 173, 595
SmiMI	CAYNNNNRTG	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	229, 961
SmoI	CTYRAG	2 cut(s)	229, 961
Sse9I	AATT	9 cut(s)	486, 526, 600, 654, 685, 807, 923, 933, 938
SspMI	CTAG	1 cut(s)	1076
SstI	GAGCTC	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	211, 946
TaiI	ACGT	2 cut(s)	138, 580
TaqI	TCGA	1 cut(s)	354
TasI	AATT	9 cut(s)	486, 526, 600, 654, 685, 807, 923, 933, 938
TfiI	GAWTC	3 cut(s)	701, 887, 1041
Tru1I	TTAA	3 cut(s)	429, 551, 936
Tru9I	TTAA	3 cut(s)	429, 551, 936
TscAI	CASTG	2 cut(s)	698, 949
TseFI	GTSAC	1 cut(s)	870
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	870
TspDTI	ATGAA	5 cut(s)	17, 41, 536, 901, 1044
TspRI	CASTG	2 cut(s)	698, 949
XapI	RAATTY	3 cut(s)	526, 923, 938
XceI	RCATGY	2 cut(s)	511, 982
XspI	CTAG	1 cut(s)	1076
Zsp2I	ATGCAT	2 cut(s)	161, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.