Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

7061648 .. 7065450

Gene Structure 3803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATTTTGCTTCAAGAAATGCAAGAAGACATCAGTTTAAATGATTTGAAAACTTTTTTATACCGAGTTTTGGTTTTATGTCCATGTTGTGTAATGTTTTTTTATGTAATAGCCCCTAAAAAACATGTCTATTATTTTAGTTTAGTTGGGCACACACAAAAAATTTCGCCCTGGGCATCAAAAAGCTCAGGGCCGACCCTGCTTATCATTGATAAGGAAAACAATTCACAGCGAGGTGATTCTGATCTTGAAATGGTTATTGGTCTTTTCAAAAATGATTTCAGCTTATTTTCTTCAAGGAATAAGGAGGGCCTCATATTAGTTTTAGGTCTGAGTAGTGGAACAATTGATGTATCTTATTTGGAGATATCTAATGGTGTTTCTGAGGTGACGAAAATTATTTTGTCTATGACGTTTTCTAATTGTCATCGAATCATGCCACATAAGACGACACCAGTAGAGATGACGTTCTGCATGATGTTTGGAAAATGCCATGAAAACCATTTTATGACATCACTGATAAGCTCGCTGAATATTTTGTGTACTAGTGTTGGTAAGAGAGTAACCAAAATGGTAACAAAATGGTGGGCATTCGCTGAAAGCCCAAAAGACCCGAGTCCACTACCCTCAAACTTACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.06

Weight (kDa)

8.14

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	162
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	5 cut(s)	14, 49, 251, 271, 297
AhlI	ACTAGT	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	170
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	3 cut(s)	186, 285, 525
AluI	AGCT	3 cut(s)	186, 285, 525
Ama87I	CYCGRG	1 cut(s)	613
AoxI	GGCC	2 cut(s)	191, 310
ApoI	RAATTY	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	191, 310
AsuHPI	GGTGA	2 cut(s)	248, 400
AvaI	CYCGRG	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	172
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	1 cut(s)	546
Bme1390I	CCNGG	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	613
BmgT120I	GGNCC	2 cut(s)	191, 310
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	185
BoxI	GACNNNNGTC	1 cut(s)	615
BpiI	GAAGAC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	170, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	455
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	170, 171
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	3 cut(s)	201, 323, 375
BseNI	ACTGG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	153
BshFI	GGCC	2 cut(s)	193, 312
BsiHKCI	CYCGRG	1 cut(s)	613
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	193, 312
BsoBI	CYCGRG	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	244
BspANI	GGCC	2 cut(s)	193, 312
BspCNI	CTCAG	3 cut(s)	200, 324, 376
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	2 cut(s)	170, 171
BssMI	GATC	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	3 cut(s)	187, 332, 384
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	128
BstPAI	GACNNNNGTC	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	193, 312
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	191, 310
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	5 cut(s)	84, 125, 436, 475, 494
CviJI	RGCY	7 cut(s)	113, 186, 193, 285, 312, 525, 603
CviKI_1	RGCY	7 cut(s)	113, 186, 193, 285, 312, 525, 603
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	3 cut(s)	187, 332, 384
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DraI	TTTAAA	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	613
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	369
FaeI	CATG	5 cut(s)	87, 128, 439, 478, 497
FatI	CATG	5 cut(s)	83, 124, 435, 474, 493
FspBI	CTAG	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	193, 312
Hin1II	CATG	5 cut(s)	87, 128, 439, 478, 497
HinfI	GANTC	3 cut(s)	239, 432, 616
HphI	GGTGA	2 cut(s)	248, 400
Hpy166II	GTNNAC	2 cut(s)	543, 620
Hpy188I	TCNGA	3 cut(s)	244, 333, 385
Hpy188III	TCNNGA	2 cut(s)	14, 248
Hpy8I	GTNNAC	2 cut(s)	543, 620
HpyCH4IV	ACGT	2 cut(s)	413, 467
HpyCH4V	TGCA	2 cut(s)	22, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	3 cut(s)	187, 332, 384
HpySE526I	ACGT	2 cut(s)	413, 467
Hsp92II	CATG	5 cut(s)	87, 128, 439, 478, 497
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	157, 174, 184, 212, 468
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	2 cut(s)	413, 467
MaeIII	GTNAC	3 cut(s)	388, 562, 574
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	38, 285
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	5 cut(s)	162, 223, 345, 396, 421
MlyI	GAGTC	1 cut(s)	625
MnlI	CCTC	5 cut(s)	227, 301, 323, 379, 637
MseI	TTAA	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	172
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	5 cut(s)	87, 128, 439, 478, 497
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	128
PasI	CCCWGGG	1 cut(s)	171
PciI	ACATGT	1 cut(s)	124
PctI	GAATGC	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	239, 432
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
PscI	ACATGT	1 cut(s)	124
PshAI	GACNNNNGTC	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	191, 310
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	191, 310
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	8 cut(s)	188, 238, 287, 331, 390, 416, 470, 527
SfaNI	GCATC	1 cut(s)	185
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	5 cut(s)	162, 223, 345, 396, 421
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	170
TaiI	ACGT	2 cut(s)	416, 470
TaqI	TCGA	1 cut(s)	430
TasI	AATT	5 cut(s)	162, 223, 345, 396, 421
TatI	WGTACW	1 cut(s)	542
TfiI	GAWTC	2 cut(s)	239, 432
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	522
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	128
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.