Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

10798889 .. 10799512

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18481.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATTGATAATGTGTTCGAGCAATTTCGATTGACAACACCACCACCAGTCATGTCGCAACCAGCCTACTACCAGCAGCGATCGTTAGAGCAGTCATCAACTCCAATTTCTGATCCTAAAACTCAAATTGAGATTGTTCACTCTCATCTCTGGAAGGCTCGAAGCAAGCAAGTAGCTCTCAAGTCGACTGCGGCCACTGGAGGAGTGAAGAAACCACAGTGTTTCAAGCTAGGAGCATCCACACTCCACAAGACCGCCAAATACCAGAAGCGCAGTTTCCGGAGTTCAGCTGCGTCTCTTCTGCTCGAGGATGCCATTTCGGCTCTGTCTAACCTTAACCCTGCTTCTGTTTGCCTGGTGAGTGATACTGGCACTAGTATTCTTAATCTCAATTTTGTGAGTACTGACTGTGATGGCGTAGATTATGTGCTTGTTGTAAAATTGAATGGGAGTGATGTGAATTTCGAAAATGGAGAGGATAAGAGTTCTGACAGGAAGGCTAAGGTGTATAGTGAAGATGTGAAAGAGCTTAGTGAGCTTGACGGTGTTAGTGTAAATAAGCAAGATGATCTGCAAGGACCAAATTCGGGTGAGAATGGGAGAGAATGCACTCCACCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.51

Weight (kDa)

5.94

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	279
AciI	CCGC	2 cut(s)	191, 255
AclWI	GGATC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	2 cut(s)	460, 583
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	2 cut(s)	226, 445
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	5 cut(s)	176, 229, 290, 529, 538
AluI	AGCT	5 cut(s)	176, 229, 290, 529, 538
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	279
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	76, 290
ApoI	RAATTY	2 cut(s)	460, 583
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	370, 602
AsuII	TTCGAA	1 cut(s)	465
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	578
BbvI	GCAGC	2 cut(s)	88, 277
BccI	CCATC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	300
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	2 cut(s)	230, 375
BglI	GCCNNNNNGGC	1 cut(s)	320
BisI	GCNGC	3 cut(s)	77, 192, 291
BlsI	GCNGC	3 cut(s)	78, 193, 292
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	578
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	578
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	245, 301
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu14I	TTCGAA	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	3 cut(s)	47, 202, 373
BseAI	TCCGGA	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	236, 316
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseNI	ACTGG	3 cut(s)	47, 202, 373
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	88, 277
Bsh1285I	CGRYCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	611
BsnI	GGCC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	465
Bsp13I	TCCGGA	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	80, 112, 568
BspACI	CCGC	2 cut(s)	191, 255
BspANI	GGCC	1 cut(s)	194
BspEI	TCCGGA	1 cut(s)	279
BspPI	GGATC	1 cut(s)	107
BspT104I	TTCGAA	1 cut(s)	465
BsrI	ACTGG	3 cut(s)	47, 202, 373
BssMI	GATC	3 cut(s)	80, 112, 568
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	219, 410, 545
Bst6I	CTCTTC	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	501, 530
BstF5I	GGATG	2 cut(s)	236, 316
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	3 cut(s)	83, 115, 571
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	80, 112, 568
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 535
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	88, 277
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	236, 316
BtsIMutI	CAGTG	2 cut(s)	195, 224
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	578
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	1 cut(s)	52
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	2 cut(s)	501, 530
DpnI	GATC	3 cut(s)	82, 114, 570
DpnII	GATC	3 cut(s)	80, 112, 568
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	1 cut(s)	55
FaiI	YATR	3 cut(s)	53, 426, 510
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	3 cut(s)	77, 192, 291
FokI	GGATG	2 cut(s)	223, 323
Fsp4HI	GCNGC	3 cut(s)	77, 192, 291
FspBI	CTAG	2 cut(s)	230, 375
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	3 cut(s)	77, 192, 291
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	370, 602
Hpy166II	GTNNAC	2 cut(s)	139, 186
Hpy188I	TCNGA	2 cut(s)	112, 490
Hpy188III	TCNNGA	2 cut(s)	151, 280
Hpy8I	GTNNAC	2 cut(s)	139, 186
HpyAV	CCTTC	2 cut(s)	148, 490
HpyCH4III	ACNGT	3 cut(s)	219, 410, 545
HpyCH4V	TGCA	2 cut(s)	574, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 535
HpyF3I	CTNAG	2 cut(s)	501, 530
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	271
Kpn2I	TCCGGA	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	80, 112, 568
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	2 cut(s)	88, 277
LweI	GCATC	2 cut(s)	245, 301
MaeI	CTAG	2 cut(s)	230, 375
MalI	GATC	3 cut(s)	82, 114, 570
MboI	GATC	3 cut(s)	80, 112, 568
MboII	GAAGA	3 cut(s)	220, 290, 527
MluCI	AATT	7 cut(s)	23, 105, 126, 391, 440, 460, 583
MnlI	CCTC	3 cut(s)	194, 301, 469
MroI	TCCGGA	1 cut(s)	279
MseI	TTAA	2 cut(s)	336, 384
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	320, 535
NdeII	GATC	3 cut(s)	80, 112, 568
NlaIII	CATG	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	305
PctI	GAATGC	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	78, 193, 292
Ple19I	CGATCG	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	578
PspXI	VCTCGAGB	1 cut(s)	305
PvuI	CGATCG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SalI	GTCGAC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	336, 384
SatI	GCNGC	3 cut(s)	77, 192, 291
Sau3AI	GATC	3 cut(s)	80, 112, 568
Sau96I	GGNCC	1 cut(s)	578
ScaI	AGTACT	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	8 cut(s)	178, 231, 292, 336, 507, 531, 540, 619
SfaNI	GCATC	2 cut(s)	245, 301
Sfr274I	CTCGAG	1 cut(s)	305
SfuI	TTCGAA	1 cut(s)	465
SinI	GGWCC	1 cut(s)	578
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	179, 305
SmoI	CTYRAG	2 cut(s)	179, 305
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	7 cut(s)	23, 105, 126, 391, 440, 460, 583
SsiI	CCGC	2 cut(s)	191, 255
SspMI	CTAG	2 cut(s)	230, 375
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	3 cut(s)	219, 410, 545
TaqI	TCGA	6 cut(s)	18, 28, 160, 185, 306, 465
TasI	AATT	7 cut(s)	23, 105, 126, 391, 440, 460, 583
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	336, 384
Tru9I	TTAA	2 cut(s)	336, 384
TscAI	CASTG	2 cut(s)	202, 224
TseI	GCWGC	2 cut(s)	76, 290
TspRI	CASTG	2 cut(s)	202, 224
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	2 cut(s)	460, 583
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	185
XspI	CTAG	2 cut(s)	230, 375
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.