Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

17560033 .. 17560896

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTGTTCCATTTCCTTCTCCAGTTTGTACATCTTGGTTCCCAGAAAATAACACACAAGCTGTTGGTGGTGGAAATCTTGTCTCTTGCACCTAGTGAAGGCCTACGTGCTCTTGCTTCTGGGGCAATCTCACTAACCAATGCTTTAGGAATTGCTATTAGTGGCTGCATTCCTCAAGATACCGCTATCCCTGCATCCAACACCAGTGGTGCTTGGGACAACGCCAAGAAGTATATTGAGATGGATTGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

85

Amino Acids

8.99

Weight (kDa)

6.23

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	98
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	93
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	22, 204
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	22, 204
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp1407I	TGTACA	1 cut(s)	28
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	40
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	22, 204
BstAUI	TGTACA	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	107
BstENI	CCTNNNNNAGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	194
BstMAI	GTCTC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 191
BstV1I	GCAGC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	29
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviJI	RGCY	3 cut(s)	61, 102, 165
CviKI_1	RGCY	3 cut(s)	61, 102, 165
CviQI	GTAC	1 cut(s)	29
DraIII	CACNNNGTG	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	96
FaiI	YATR	2 cut(s)	234, 253
FaqI	GGGAC	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	26, 92
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	89, 168, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 191
HpySE526I	ACGT	1 cut(s)	106
LpnPI	CCDG	5 cut(s)	35, 56, 105, 204, 217
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	122, 191
NlaIV	GGNNCC	1 cut(s)	40
PceI	AGGCCT	1 cut(s)	102
PctI	GAATGC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SatI	GCNGC	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	3 cut(s)	63, 94, 109
SfaNI	GCATC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	150
SseBI	AGGCCT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	102
TaiI	ACGT	1 cut(s)	109
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	28
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	165
TspRI	CASTG	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	96
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.