Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Reverse (-)

12768781 .. 12770033

Gene Structure 1253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14385.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAATCTGGGAGCTAGGCAACCGGCGATTCCGCCGCTCGGCGTCGAACCTCTTGTGCTCGACGAAGATTTGTTTCTTCTTGCAATGAGCCGTGCACTGGATAACACTTTACCGTCGCTTCAATCCAAGCTGCAAAGTGTGATTGATAATTCAAACCTTAACCCTGCTTCTGTTTGCCGGGTGAGTGATACTGGCACTAGTATTCTTAATCTCAATTTTGTGAGTACTGATTGCGTTGGCGTAGATTCTGTGCTTGTTGCAAAATTGAATAGGAGTGATGTGAATTTCGAAAATGGAGAGGATAAAAGTTCTGATAAGAAGGCTAAGGTGTATAGTGGAGATGTGAAAGAGCTTAGTGAGCTTGACGGTGTTAGTGTTAAGCAAGATGATCTGCAAGGACCGAATTTGGGTGAAAATGGGAGAGAATGCGATGCACTCCGCCTGTTTGATGAAATGTCACAGTCATATGGGTTGTGTGATGCAGGAAATAACATTGTTGGATACATGGGCATTCGAGACAAAGGTGGGGGTCTAGCTTCTCATTGTACATTTGTTGAGTACTATCAATTGCCAGAGAAGAAAACAGCTACTGATCATTTGGACTGCAAGCCTTATGTGGTTCATAACGACTTGGGTTCAAAAGAAAAAAGTGCTAGTGCTGTTGCGCATAGTGAAGCTTTCACTGGTGTCCATGGAATCCTGGAGTTAGGATATTGTAGATTGAATTATTTTGGTAAAGGTATCTTAAAGGCTGAGGGGAATGTGAATGGCATCAGTGGACCTGCCTTGATTGATAATGATCCAAGGGAACAAATCCAAGTTGACGATTATATGGTTCAACAGCTTGAGAGAATTAGAAATGAATGGGGTTGGAGCAAACAAGAGTTTGGAGAAAATATTATTTCAGCAGTATCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

307

Amino Acids

33.29

Weight (kDa)

4.68

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Enolase_N	PF03952	214 - 306	4.6e-08	Enolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	666
Acc36I	ACCTGC	1 cut(s)	790
AccBSI	CCGCTC	1 cut(s)	37
AciI	CCGC	3 cut(s)	32, 35, 439
AclWI	GGATC	1 cut(s)	794
AcsI	RAATTY	2 cut(s)	283, 403
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	226, 547, 560
AfiI	CCNNNNNNNGG	3 cut(s)	38, 97, 407
AgsI	TTSAA	6 cut(s)	122, 153, 268, 639, 724, 839
AhlI	ACTAGT	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	8 cut(s)	14, 130, 352, 361, 536, 587, 677, 844
AluI	AGCT	8 cut(s)	14, 130, 352, 361, 536, 587, 677, 844
Alw21I	GWGCWC	2 cut(s)	60, 97
Alw26I	GTCTC	1 cut(s)	510
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	794
AlwNI	CAGNNNCTG	1 cut(s)	590
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	283, 403
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	2 cut(s)	398, 779
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	193, 422
AsuII	TTCGAA	1 cut(s)	288
AvaII	GGWCC	2 cut(s)	398, 779
BaeGI	GKGCMC	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	60, 97
BbvCI	CCTCAGC	1 cut(s)	753
BbvI	GCAGC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	701
BciVI	GTATCC	1 cut(s)	494
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	510
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	4 cut(s)	15, 198, 533, 654
BfuAI	ACCTGC	1 cut(s)	790
BfuI	GTATCC	1 cut(s)	494
BisI	GCNGC	2 cut(s)	35, 131
BlsI	GCNGC	2 cut(s)	36, 132
BmcAI	AGTACT	2 cut(s)	226, 560
Bme1390I	CCNGG	2 cut(s)	179, 701
Bme18I	GGWCC	2 cut(s)	398, 779
BmgT120I	GGNCC	2 cut(s)	398, 779
BmrFI	CCNGG	2 cut(s)	179, 701
BmsI	GCATC	3 cut(s)	421, 469, 780
BpmI	CTGGAG	1 cut(s)	722
Bpu10I	CCTNAGC	2 cut(s)	324, 753
Bpu14I	TTCGAA	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	691, 803
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 97, 407
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	102, 196, 688
Bse3DI	GCAATG	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	2 cut(s)	691, 803
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	3 cut(s)	38, 97, 407
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	3 cut(s)	102, 196, 688
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	60, 97
BsiSI	CCGG	2 cut(s)	23, 178
BslI	CCNNNNNNNGG	3 cut(s)	38, 97, 407
BsmAI	GTCTC	1 cut(s)	510
BsmI	GAATGC	2 cut(s)	431, 510
Bsp119I	TTCGAA	1 cut(s)	288
Bsp1286I	GDGCHC	2 cut(s)	60, 97
Bsp1407I	TGTACA	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	388, 592, 799
Bsp19I	CCATGG	1 cut(s)	691
BspACI	CCGC	3 cut(s)	32, 35, 439
BspCNI	CTCAG	1 cut(s)	745
BspMI	ACCTGC	1 cut(s)	790
BspPI	GGATC	1 cut(s)	794
BspT104I	TTCGAA	1 cut(s)	288
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	545
BsrI	ACTGG	3 cut(s)	102, 196, 688
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	691, 803
BssMI	GATC	3 cut(s)	388, 592, 799
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	691, 803
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	3 cut(s)	114, 368, 462
BstACI	GRCGYC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	608
BstDEI	CTNAG	3 cut(s)	324, 353, 753
BstDSI	CCRYGG	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	3 cut(s)	391, 595, 802
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	3 cut(s)	388, 592, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	701
BstSCI	CCNGG	2 cut(s)	177, 699
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	494
BtgI	CCRYGG	1 cut(s)	691
BtgZI	GCGATG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	95, 681, 781
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	1 cut(s)	608
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	667
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	398, 779
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	225, 546, 559
CviAII	CATG	2 cut(s)	505, 692
CviQI	GTAC	3 cut(s)	225, 546, 559
DdeI	CTNAG	3 cut(s)	324, 353, 753
DpnI	GATC	3 cut(s)	390, 594, 801
DpnII	GATC	3 cut(s)	388, 592, 799
EciI	GGCGGA	2 cut(s)	21, 428
Eco130I	CCWWGG	2 cut(s)	691, 803
Eco47I	GGWCC	2 cut(s)	398, 779
EcoRII	CCWGG	1 cut(s)	699
EcoT14I	CCWWGG	2 cut(s)	691, 803
ErhI	CCWWGG	2 cut(s)	691, 803
FaeI	CATG	2 cut(s)	508, 695
FatI	CATG	2 cut(s)	504, 691
FauNDI	CATATG	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	35, 131
Fsp4HI	GCNGC	2 cut(s)	35, 131
FspBI	CTAG	4 cut(s)	15, 198, 533, 654
FspI	TGCGCA	1 cut(s)	666
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	2 cut(s)	35, 131
GsuI	CTGGAG	1 cut(s)	722
HapII	CCGG	2 cut(s)	23, 178
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	667
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	508, 695
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	4 cut(s)	4, 28, 245, 696
HpaII	CCGG	2 cut(s)	23, 178
HphI	GGTGA	2 cut(s)	193, 422
Hpy166II	GTNNAC	3 cut(s)	95, 779, 823
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	3 cut(s)	95, 779, 823
Hpy99I	CGWCG	3 cut(s)	47, 65, 118
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	3 cut(s)	114, 368, 462
HpyCH4V	TGCA	8 cut(s)	83, 95, 133, 260, 394, 434, 482, 606
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	3 cut(s)	324, 353, 753
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	508, 695
HspAI	GCGC	1 cut(s)	665
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	388, 592, 799
LmnI	GCTCC	2 cut(s)	11, 873
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	3 cut(s)	421, 469, 780
MaeI	CTAG	4 cut(s)	15, 198, 533, 654
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	3 cut(s)	390, 594, 801
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	3 cut(s)	388, 592, 799
MboII	GAAGA	3 cut(s)	68, 77, 589
MfeI	CAATTG	1 cut(s)	566
MhlI	GDGCHC	2 cut(s)	60, 97
MluCI	AATT	8 cut(s)	148, 214, 263, 283, 403, 566, 724, 852
MmeI	TCCRAC	2 cut(s)	478, 851
MnlI	CCTC	3 cut(s)	60, 292, 748
MseI	TTAA	5 cut(s)	159, 207, 378, 746, 919
MspI	CCGG	2 cut(s)	23, 178
MspR9I	CCNGG	2 cut(s)	179, 701
MunI	CAATTG	1 cut(s)	566
Mva1269I	GAATGC	2 cut(s)	431, 510
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	1 cut(s)	358
NciI	CCSGG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	691
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	3 cut(s)	388, 592, 799
NlaIII	CATG	2 cut(s)	508, 695
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	456
NsbI	TGCGCA	1 cut(s)	666
NspV	TTCGAA	1 cut(s)	288
PctI	GAATGC	2 cut(s)	431, 510
PfeI	GAWTC	4 cut(s)	4, 28, 245, 696
PfoI	TCCNGGA	1 cut(s)	699
PkrI	GCNGC	2 cut(s)	36, 132
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspPI	GGNCC	2 cut(s)	398, 779
PstNI	CAGNNNCTG	1 cut(s)	590
RsaI	GTAC	3 cut(s)	226, 547, 560
RsaNI	GTAC	3 cut(s)	225, 546, 559
SaqAI	TTAA	5 cut(s)	159, 207, 378, 746, 919
SatI	GCNGC	2 cut(s)	35, 131
Sau3AI	GATC	3 cut(s)	388, 592, 799
Sau96I	GGNCC	2 cut(s)	398, 779
ScaI	AGTACT	2 cut(s)	226, 560
ScrFI	CCNGG	2 cut(s)	179, 701
SduI	GDGCHC	2 cut(s)	60, 97
SfaNI	GCATC	3 cut(s)	421, 469, 780
SfuI	TTCGAA	1 cut(s)	288
SinI	GGWCC	2 cut(s)	398, 779
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	8 cut(s)	148, 214, 263, 283, 403, 566, 724, 852
SsiI	CCGC	3 cut(s)	32, 35, 439
SspI	AATATT	1 cut(s)	898
SspMI	CTAG	4 cut(s)	15, 198, 533, 654
StyD4I	CCNGG	2 cut(s)	177, 699
StyI	CCWWGG	2 cut(s)	691, 803
TaaI	ACNGT	3 cut(s)	114, 368, 462
TaqI	TCGA	4 cut(s)	45, 60, 288, 514
TaqII	GACCGA	1 cut(s)	415
TasI	AATT	8 cut(s)	148, 214, 263, 283, 403, 566, 724, 852
TatI	WGTACW	3 cut(s)	224, 545, 558
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	4 cut(s)	4, 28, 245, 696
Tru1I	TTAA	5 cut(s)	159, 207, 378, 746, 919
Tru9I	TTAA	5 cut(s)	159, 207, 378, 746, 919
TscAI	CASTG	3 cut(s)	102, 688, 781
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	4 cut(s)	17, 465, 611, 876
TspRI	CASTG	3 cut(s)	102, 688, 781
VneI	GTGCAC	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	398, 779
XapI	RAATTY	2 cut(s)	283, 403
XspI	CTAG	4 cut(s)	15, 198, 533, 654
ZrmI	AGTACT	2 cut(s)	226, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.