Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

790148 .. 791828

Gene Structure 1681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCGTTCCATGGCTACGATCCCGAGATCGTAACAACGGTATCGAGCCCGCATTGGGCTGTTTCTGTGGGTTACGGCGGTGGGATATCCGGCAACTATTACGTGCCGGGTCGTATCATCTTCAAGGCAATAAATCCATCTTCTCCGCCACCAATTTCGGTGTTCGGAGCAAATGGAGGTTCTCCATTCAAGCTCGCCGTCTCCACCCTCATGGAAGAGCTCCGGAAGCCTCGCCGGTCCTCTCCGTTGCGAGGAGGTCAACCTCGCCGTTCGGTCGACCTCGCTTCACCGAGCCGGAACGCGACGATGCCGTCATCTCTAAGGGGCATGGACCTTTCAGTTTTGGAGGCGTTAGAGAAGGGAACCACACGGAAGTACTCGACCTCAAACCGTAAAGAAGCCCGGAATTACTGCCCGGGAATGAATACAGAGATAAAATGTGCTCTCTTGTCTCGGTTGAGTCCTAATCAAACAAGCGTAAGGAAGAAAAGCGTGTCATGCATCTCATCACTTGTTTCAAGCTTGTCGGATGATTTGTTGGCAAAGGATACTATTGGAGTTGTTCAGCACTTGAGCAATAAAGGCTCAAAGTCCGAAATGGCTCAAACCTCTTTGTCTCGGGTAGCCACTACTTTGAATTTAAATTTTCAAGATGTTAGAAGATCTTTTGAGAGTTTTTTGTCCAATGTGATTAAGCTCTATAATCGTAGTTCCTTGAACTATAAAGTTGGAGCAGAAATTTGGCCTCTAATGATGGGATATTGTGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

257

Amino Acids

27.99

Weight (kDa)

9.91

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	3 cut(s)	50, 78, 146
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	3 cut(s)	637, 643, 738
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	55, 251
AgsI	TTSAA	6 cut(s)	124, 190, 519, 637, 650, 718
AluBI	AGCT	4 cut(s)	193, 220, 522, 697
AluI	AGCT	4 cut(s)	193, 220, 522, 697
Alw21I	GWGCWC	2 cut(s)	222, 445
Alw26I	GTCTC	3 cut(s)	205, 456, 621
AlwI	GGATC	1 cut(s)	14
Ama87I	CYCGRG	3 cut(s)	23, 415, 618
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	1 cut(s)	743
ApoI	RAATTY	3 cut(s)	637, 643, 738
AspS9I	GGNCC	2 cut(s)	237, 331
AsuC2I	CCSGG	4 cut(s)	108, 403, 416, 417
AsuHPI	GGTGA	1 cut(s)	279
AvaI	CYCGRG	3 cut(s)	23, 415, 618
AvaII	GGWCC	2 cut(s)	237, 331
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BanII	GRGCYC	2 cut(s)	50, 222
Bbv12I	GWGCWC	2 cut(s)	222, 445
BccI	CCATC	2 cut(s)	145, 748
BceAI	ACGGC	4 cut(s)	91, 182, 252, 295
BciVI	GTATCC	1 cut(s)	541
BcnI	CCSGG	4 cut(s)	108, 403, 416, 417
BcoDI	GTCTC	3 cut(s)	205, 456, 621
BfuI	GTATCC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	662
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	4 cut(s)	108, 403, 416, 417
Bme18I	GGWCC	2 cut(s)	237, 331
BmeT110I	CYCGRG	3 cut(s)	23, 415, 618
BmgT120I	GGNCC	2 cut(s)	237, 331
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	4 cut(s)	108, 403, 416, 417
BmsI	GCATC	2 cut(s)	297, 510
BpuEI	CTTGAG	1 cut(s)	592
BpuMI	CCSGG	4 cut(s)	108, 403, 416, 417
BsaAI	YACGTR	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	10, 415
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 251
Bse118I	RCCGGY	1 cut(s)	234
BseAI	TCCGGA	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	10, 415
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	2 cut(s)	55, 251
BseRI	GAGGAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	302
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	745
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	222, 445
BsiHKCI	CYCGRG	3 cut(s)	23, 415, 618
BsiSI	CCGG	7 cut(s)	90, 107, 223, 235, 295, 403, 416
BslI	CCNNNNNNNGG	2 cut(s)	55, 251
BsmAI	GTCTC	3 cut(s)	205, 456, 621
BsmBI	CGTCTC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	745
BsoBI	CYCGRG	3 cut(s)	23, 415, 618
Bsp1286I	GDGCHC	3 cut(s)	50, 222, 445
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	19, 27, 662
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	3 cut(s)	50, 78, 146
BspANI	GGCC	1 cut(s)	745
BspEI	TCCGGA	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	14
BspQI	GCTCTTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	10, 415
BssMI	GATC	3 cut(s)	19, 27, 662
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	40, 392
Bst6I	CTCTTC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	50, 195
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	302
BstKTI	GATC	3 cut(s)	22, 30, 665
BstMAI	GTCTC	3 cut(s)	205, 456, 621
BstMBI	GATC	3 cut(s)	19, 27, 662
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 498, 582
BstSCI	CCNGG	4 cut(s)	106, 401, 414, 415
BstUI	CGCG	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	662
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	662
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	745
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	50, 195
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	237, 331
Cfr9I	CCCGGG	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	4 cut(s)	11, 211, 328, 498
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	3 cut(s)	21, 29, 664
DpnII	GATC	3 cut(s)	19, 27, 662
DraI	TTTAAA	1 cut(s)	642
DrdI	GACNNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	2 cut(s)	50, 222
Eco32I	GATATC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	237, 331
Eco53kI	GAGCTC	1 cut(s)	220
Eco88I	CYCGRG	3 cut(s)	23, 415, 618
EcoICRI	GAGCTC	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	503
EcoT38I	GRGCYC	2 cut(s)	50, 222
ErhI	CCWWGG	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	4 cut(s)	14, 214, 331, 501
FaiI	YATR	6 cut(s)	12, 212, 329, 499, 702, 723
FatI	CATG	4 cut(s)	10, 210, 327, 497
FauI	CCCGC	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	276
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	2 cut(s)	50, 222
HaeIII	GGCC	1 cut(s)	745
HapII	CCGG	7 cut(s)	90, 107, 223, 235, 295, 403, 416
Hin1II	CATG	4 cut(s)	14, 214, 331, 501
HincII	GTYRAC	2 cut(s)	260, 277
HindII	GTYRAC	2 cut(s)	260, 277
HindIII	AAGCTT	1 cut(s)	520
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	7 cut(s)	90, 107, 223, 235, 295, 403, 416
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	2 cut(s)	260, 277
Hpy188I	TCNGA	3 cut(s)	167, 529, 595
Hpy188III	TCNNGA	4 cut(s)	23, 223, 650, 771
Hpy8I	GTNNAC	2 cut(s)	260, 277
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	2 cut(s)	40, 392
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 498, 582
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	14, 214, 331, 501
Kpn2I	TCCGGA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	19, 27, 662
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	3 cut(s)	167, 225, 731
LpnPI	CCDG	7 cut(s)	103, 120, 236, 248, 308, 416, 429
LweI	GCATC	2 cut(s)	297, 510
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	31, 71
MalI	GATC	3 cut(s)	21, 29, 664
MboI	GATC	3 cut(s)	19, 27, 662
MboII	GAAGA	5 cut(s)	112, 132, 227, 496, 672
MflI	RGATCY	1 cut(s)	662
MhlI	GDGCHC	3 cut(s)	50, 222, 445
MluCI	AATT	5 cut(s)	153, 406, 637, 643, 738
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	2 cut(s)	507, 709
Mph1103I	ATGCAT	1 cut(s)	503
MroI	TCCGGA	1 cut(s)	222
MseI	TTAA	2 cut(s)	641, 693
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	7 cut(s)	90, 107, 223, 235, 295, 403, 416
MspR9I	CCNGG	4 cut(s)	108, 403, 416, 417
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	226, 498, 582
NciI	CCSGG	4 cut(s)	108, 403, 416, 417
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	19, 27, 662
NlaIII	CATG	4 cut(s)	14, 214, 331, 501
NlaIV	GGNNCC	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	503
PciSI	GCTCTTC	1 cut(s)	210
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
Ppu21I	YACGTR	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	237, 331
PsuI	RGATCY	1 cut(s)	662
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	222
SalI	GTCGAC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	641, 693
Sau3AI	GATC	3 cut(s)	19, 27, 662
Sau96I	GGNCC	2 cut(s)	237, 331
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	4 cut(s)	108, 403, 416, 417
SduI	GDGCHC	3 cut(s)	50, 222, 445
SfaNI	GCATC	2 cut(s)	297, 510
SinI	GGWCC	2 cut(s)	237, 331
SmaI	CCCGGG	1 cut(s)	417
SmiI	ATTTAAAT	1 cut(s)	642
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
Sse9I	AATT	5 cut(s)	153, 406, 637, 643, 738
SsiI	CCGC	3 cut(s)	50, 78, 146
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	4 cut(s)	106, 401, 414, 415
StyI	CCWWGG	1 cut(s)	10
SwaI	ATTTAAAT	1 cut(s)	642
TaaI	ACNGT	2 cut(s)	40, 392
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	44, 276, 380
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	5 cut(s)	153, 406, 637, 643, 738
TatI	WGTACW	1 cut(s)	375
Tru1I	TTAA	2 cut(s)	641, 693
Tru9I	TTAA	2 cut(s)	641, 693
TspDTI	ATGAA	1 cut(s)	437
TspGWI	ACGGA	2 cut(s)	234, 385
TspMI	CCCGGG	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	237, 331
XapI	RAATTY	3 cut(s)	637, 643, 738
XmaI	CCCGGG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	276
ZrmI	AGTACT	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.