Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Reverse (-)

15694629 .. 15695660

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23806.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTTCTGGGAGCTGAGCAACTGGCAATTCCGCCGCTCGGCGTCGAACCTCTTGTGCTCGACGAGGATTTGTTTCTCCTTGCAATGAGCCGTGCACTGGAAAACACTTTACCGTTGCTTCAATCCAAGATGCAAAGTGTGATTCATAATGTGTTCGAGCAATTTCGATTGACAACACCACCACCAGGCCGTTACCAGCAGCGACCATTGGAGCAGTCATCAACTCCAATTTCTGATCCTAAAACTCAAATTGAGATTGTCCACTCTCATCTCTGGAAGGCTCGAAGCAAGCAAGTCGCTCTCAAGTCGACTGCGGTCATCGGAGGAGTGAAGAAGAGACACCGATCTAGGCTGGGAACCTACGGGTTCCTTGCGACTGACACACACCCGAAGCGCAAGGTCTCTTTTCAACGCCTTGTGGCTGAAATAGCTCAAGATGTCAAGGTTGATTGGAGGTCCCAGAGCTCAGTTGTGCCTTCTCTGCTAGGCAGCACTGTGTCGACTCAAGTGAACAACACTAATGCATCCTTTTGTTCAGGACCAAATTCGGGTGAGAAGGTGAGAGAATGTCATGCACTCCACCTGTTTGATGAAATGCTGCATTCAAATGAGTTGGGTAATGTAGGAAGGACTGTTCCAGCTCTTACGAGTATTCGAGATAAAGGTGGGGGACTTGCTCACCAACCTTTAGAATATGCACTTGGGGTGAATTGTGCCAAAGATAATGAAGGTGTTGACATGAAGGCTAATCAACTTGAGGATGACAATGCTATATCGGAGATAGGTTTTAGCTCTCAACTTATTCAAAGCAATGATTTACTTAAGATTGTTTCCAGGGCAGAGGTTCCAATTGATGGGATTGTAATTACTGGTCAAACCCATGTGAATGAGAGGTTGACCACACGAGGCAAGGGCCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

308

Amino Acids

33.69

Weight (kDa)

7.81

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	854
AccBSI	CCGCTC	1 cut(s)	37
AccI	GTMKAC	2 cut(s)	308, 500
AciI	CCGC	3 cut(s)	32, 35, 314
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	544
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	5 cut(s)	38, 97, 185, 548, 854
AflII	CTTAAG	1 cut(s)	821
AgsI	TTSAA	4 cut(s)	122, 410, 606, 806
AjnI	CCWGG	2 cut(s)	184, 833
AjuI	GAANNNNNNNTTGG	2 cut(s)	684, 716
AloI	GAACNNNNNNTCC	2 cut(s)	618, 650
AluBI	AGCT	5 cut(s)	14, 431, 465, 641, 792
AluI	AGCT	5 cut(s)	14, 431, 465, 641, 792
Alw21I	GWGCWC	3 cut(s)	60, 97, 467
Alw26I	GTCTC	2 cut(s)	331, 406
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	2 cut(s)	187, 913
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	199, 489, 598
ApoI	RAATTY	1 cut(s)	544
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	3 cut(s)	456, 539, 913
AsuHPI	GGTGA	4 cut(s)	563, 571, 671, 718
AvaII	GGWCC	2 cut(s)	456, 539
BaeGI	GKGCMC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	467
BauI	CACGAG	1 cut(s)	903
Bbv12I	GWGCWC	3 cut(s)	60, 97, 467
BbvI	GCAGC	3 cut(s)	211, 501, 585
BccI	CCATC	1 cut(s)	848
BceAI	ACGGC	2 cut(s)	75, 174
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	2 cut(s)	186, 835
BcoDI	GTCTC	2 cut(s)	331, 406
BfaI	CTAG	2 cut(s)	348, 485
BfrI	CTTAAG	1 cut(s)	821
BisI	GCNGC	4 cut(s)	35, 200, 490, 599
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	4 cut(s)	36, 201, 491, 600
Bme1390I	CCNGG	2 cut(s)	186, 835
Bme18I	GGWCC	2 cut(s)	456, 539
BmgT120I	GGNCC	3 cut(s)	456, 539, 913
BmiI	GGNNCC	4 cut(s)	358, 368, 458, 846
BmrFI	CCNGG	2 cut(s)	186, 835
BmsI	GCATC	2 cut(s)	120, 533
BoxI	GACNNNNGTC	1 cut(s)	314
Bpu1102I	GCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	4 cut(s)	287, 417, 489, 776
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	834
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 97, 185, 548, 854
Bse1I	ACTGG	3 cut(s)	27, 102, 874
Bse3DI	GCAATG	2 cut(s)	90, 817
BseBI	CCWGG	2 cut(s)	186, 835
BseDI	CCNNGG	1 cut(s)	834
BseGI	GGATG	2 cut(s)	524, 766
BseLI	CCNNNNNNNGG	5 cut(s)	38, 97, 185, 548, 854
BseMI	GCAATG	2 cut(s)	90, 817
BseMII	CTCAG	2 cut(s)	6, 480
BseNI	ACTGG	3 cut(s)	27, 102, 874
BseRI	GAGGAG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	211, 501, 585
BseYI	CCCAGC	1 cut(s)	352
BshFI	GGCC	2 cut(s)	189, 915
BsiHKAI	GWGCWC	3 cut(s)	60, 97, 467
BslFI	GGGAC	2 cut(s)	442, 684
BslI	CCNNNNNNNGG	5 cut(s)	38, 97, 185, 548, 854
BsmAI	GTCTC	2 cut(s)	331, 406
BsmFI	GGGAC	2 cut(s)	442, 684
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	189, 915
Bso31I	GGTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	3 cut(s)	60, 97, 467
Bsp143I	GATC	2 cut(s)	235, 344
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	3 cut(s)	32, 35, 314
BspANI	GGCC	2 cut(s)	189, 915
BspCNI	CTCAG	2 cut(s)	7, 479
BspLI	GGNNCC	4 cut(s)	358, 368, 458, 846
BspPI	GGATC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	406
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	90, 817
BsrI	ACTGG	3 cut(s)	27, 102, 874
BssECI	CCNNGG	1 cut(s)	834
BssMI	GATC	2 cut(s)	235, 344
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	903
Bst2BI	CACGAG	1 cut(s)	903
Bst2UI	CCWGG	2 cut(s)	186, 835
Bst4CI	ACNGT	3 cut(s)	114, 496, 634
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	821
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	15, 466
BstF5I	GGATG	2 cut(s)	524, 766
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	2 cut(s)	238, 347
BstMAI	GTCTC	2 cut(s)	331, 406
BstMBI	GATC	2 cut(s)	235, 344
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 481
BstNI	CCWGG	2 cut(s)	186, 835
BstPAI	GACNNNNGTC	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	184, 833
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	211, 501, 585
BsuRI	GGCC	2 cut(s)	189, 915
BtsCI	GGATG	2 cut(s)	524, 766
BtsIMutI	CAGTG	2 cut(s)	95, 492
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	456, 539, 913
CseI	GACGC	1 cut(s)	31
CviAII	CATG	3 cut(s)	572, 739, 881
DdeI	CTNAG	2 cut(s)	15, 466
DpnI	GATC	2 cut(s)	237, 346
DpnII	GATC	2 cut(s)	235, 344
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	456, 539
Eco53kI	GAGCTC	1 cut(s)	465
EcoICRI	GAGCTC	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRII	CCWGG	2 cut(s)	184, 833
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	467
FaeI	CATG	3 cut(s)	575, 742, 884
FaiI	YATR	6 cut(s)	147, 573, 696, 740, 773, 882
FaqI	GGGAC	2 cut(s)	442, 684
FatI	CATG	3 cut(s)	571, 738, 880
FblI	GTMKAC	2 cut(s)	308, 500
Fnu4HI	GCNGC	4 cut(s)	35, 200, 490, 599
FokI	GGATG	2 cut(s)	511, 773
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	4 cut(s)	35, 200, 490, 599
FspBI	CTAG	2 cut(s)	348, 485
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	4 cut(s)	35, 200, 490, 599
GsaI	CCCAGC	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	189, 915
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	575, 742, 884
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	4 cut(s)	309, 501, 736, 897
HindII	GTYRAC	4 cut(s)	309, 501, 736, 897
HinfI	GANTC	2 cut(s)	142, 502
HphI	GGTGA	4 cut(s)	563, 571, 671, 718
Hpy166II	GTNNAC	7 cut(s)	95, 262, 309, 501, 511, 736, 897
Hpy188I	TCNGA	3 cut(s)	235, 323, 778
Hpy188III	TCNNGA	4 cut(s)	274, 434, 537, 656
Hpy8I	GTNNAC	7 cut(s)	95, 262, 309, 501, 511, 736, 897
Hpy99I	CGWCG	2 cut(s)	47, 65
HpyAV	CCTTC	6 cut(s)	271, 486, 550, 621, 722, 736
HpyCH4III	ACNGT	3 cut(s)	114, 496, 634
HpyCH4V	TGCA	7 cut(s)	83, 95, 133, 524, 575, 601, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 481
HpyF3I	CTNAG	2 cut(s)	15, 466
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	575, 742, 884
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	235, 344
LmnI	GCTCC	2 cut(s)	11, 211
Lsp1109I	GCAGC	3 cut(s)	211, 501, 585
LweI	GCATC	2 cut(s)	120, 533
MaeI	CTAG	2 cut(s)	348, 485
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	237, 346
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	2 cut(s)	235, 344
MboII	GAAGA	2 cut(s)	343, 346
MfeI	CAATTG	1 cut(s)	849
MhlI	GDGCHC	3 cut(s)	60, 97, 467
MluCI	AATT	8 cut(s)	27, 161, 228, 249, 544, 709, 849, 864
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	8 cut(s)	58, 60, 317, 447, 751, 835, 885, 899
Mph1103I	ATGCAT	1 cut(s)	526
MseI	TTAA	1 cut(s)	822
MslI	CAYNNNNRTG	2 cut(s)	606, 885
MspCI	CTTAAG	1 cut(s)	821
MspR9I	CCNGG	2 cut(s)	186, 835
MunI	CAATTG	1 cut(s)	849
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	2 cut(s)	186, 835
MwoI	GCNNNNNNNGC	2 cut(s)	428, 481
NdeII	GATC	2 cut(s)	235, 344
NlaIII	CATG	3 cut(s)	575, 742, 884
NlaIV	GGNNCC	4 cut(s)	358, 368, 458, 846
NmeAIII	GCCGAG	1 cut(s)	18
NsiI	ATGCAT	1 cut(s)	526
PctI	GAATGC	1 cut(s)	601
PfeI	GAWTC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	854
PkrI	GCNGC	4 cut(s)	36, 201, 491, 600
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
PpuMI	RGGWCCY	1 cut(s)	456
PshAI	GACNNNNGTC	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	184, 833
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	2 cut(s)	184, 833
PspN4I	GGNNCC	4 cut(s)	358, 368, 458, 846
PspPI	GGNCC	3 cut(s)	456, 539, 913
PspPPI	RGGWCCY	1 cut(s)	456
RseI	CAYNNNNRTG	2 cut(s)	606, 885
SacI	GAGCTC	1 cut(s)	467
SalI	GTCGAC	2 cut(s)	307, 499
SaqAI	TTAA	1 cut(s)	822
SatI	GCNGC	4 cut(s)	35, 200, 490, 599
Sau3AI	GATC	2 cut(s)	235, 344
Sau96I	GGNCC	3 cut(s)	456, 539, 913
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	2 cut(s)	186, 835
SduI	GDGCHC	3 cut(s)	60, 97, 467
SfaNI	GCATC	2 cut(s)	120, 533
SinI	GGWCC	2 cut(s)	456, 539
SmiMI	CAYNNNNRTG	2 cut(s)	606, 885
SmlI	CTYRAG	5 cut(s)	302, 432, 504, 755, 821
SmoI	CTYRAG	5 cut(s)	302, 432, 504, 755, 821
Sse9I	AATT	8 cut(s)	27, 161, 228, 249, 544, 709, 849, 864
SsiI	CCGC	3 cut(s)	32, 35, 314
SspMI	CTAG	2 cut(s)	348, 485
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	184, 833
TaaI	ACNGT	3 cut(s)	114, 496, 634
TaqI	TCGA	8 cut(s)	45, 60, 156, 166, 283, 308, 500, 655
TasI	AATT	8 cut(s)	27, 161, 228, 249, 544, 709, 849, 864
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	822
Tru9I	TTAA	1 cut(s)	822
TscAI	CASTG	2 cut(s)	102, 499
TseI	GCWGC	3 cut(s)	199, 489, 598
TspDTI	ATGAA	4 cut(s)	134, 606, 741, 755
TspRI	CASTG	2 cut(s)	102, 499
Van91I	CCANNNNNTGG	1 cut(s)	854
Vha464I	CTTAAG	1 cut(s)	821
VneI	GTGCAC	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	456, 539
XapI	RAATTY	1 cut(s)	544
XmiI	GTMKAC	2 cut(s)	308, 500
XspI	CTAG	2 cut(s)	348, 485
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.