Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

38866448 .. 38877343

Gene Structure 10896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGAGCTCGAGGCAAGAACAGCCGCACCTCCAGCGACTGTGCACGATGGCTAAGGGCTGTGAATAATGATGAAAAGCTAGCTAATCAAGAACACATTGAACACATGAAGAACAAAGAAAAGATGTCAACCAAAGTGCACAACTTAGCCTCCAAGACATCCCCTCTCTCGTGGAAACACCGCTACTTCTATAGCCAACAGTATATCCACTCTCTTCTGAGCTCAAATAACCAACAAGCATTGTCGCCGGAGGTGGCATGCAGCGATCTTCTTCTCCTTGCTGCACCTTCCACCGTCCAAACCACGCCACCAAACTACCTTAGAATTGAAGAGGACGGCGAGAGCTTTCCAAGGTACCTGTGGCGCCAAAATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

14.5

Weight (kDa)

9.39

Isoelectric Point (pI)

71.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	2 cut(s)	354, 363
AciI	CCGC	2 cut(s)	25, 181
AcyI	GRCGYC	1 cut(s)	364
AfaI	GTAC	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	101, 329
AluBI	AGCT	5 cut(s)	8, 79, 83, 222, 345
AluI	AGCT	5 cut(s)	8, 79, 83, 222, 345
Alw21I	GWGCWC	4 cut(s)	10, 46, 141, 224
Alw44I	GTGCAC	2 cut(s)	42, 137
AlwNI	CAGNNNCTG	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	9
ApaLI	GTGCAC	2 cut(s)	42, 137
ApeKI	GCWGC	2 cut(s)	261, 281
Asp718I	GGTACC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	366
AsuNHI	GCTAGC	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	9
BaeGI	GKGCMC	2 cut(s)	46, 141
BanI	GGYRCC	2 cut(s)	354, 363
BanII	GRGCYC	2 cut(s)	10, 224
BauI	CACGAG	1 cut(s)	169
Bbv12I	GWGCWC	4 cut(s)	10, 46, 141, 224
BbvI	GCAGC	2 cut(s)	268, 273
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	352
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	190, 374
BfoI	RGCGCY	1 cut(s)	367
BisI	GCNGC	3 cut(s)	25, 262, 282
BlsI	GCNGC	3 cut(s)	26, 263, 283
BmeT110I	CYCGRG	1 cut(s)	9
BmiI	GGNNCC	2 cut(s)	356, 365
BmtI	GCTAGC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	209
BseSI	GKGCMC	2 cut(s)	46, 141
BseXI	GCAGC	2 cut(s)	268, 273
BsgI	GTGCAG	1 cut(s)	267
BshNI	GGYRCC	2 cut(s)	354, 363
BsiHKAI	GWGCWC	4 cut(s)	10, 46, 141, 224
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	4 cut(s)	10, 46, 141, 224
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	25, 181
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	356, 365
BspOI	GCTAGC	1 cut(s)	83
BspT107I	GGYRCC	2 cut(s)	354, 363
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	1 cut(s)	364
BssSI	CACGAG	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	169
Bst4CI	ACNGT	3 cut(s)	41, 201, 295
Bst6I	CTCTTC	2 cut(s)	219, 324
BstACI	GRCGYC	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	81, 259
BstDEI	CTNAG	4 cut(s)	53, 145, 218, 320
BstF5I	GGATG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 33
BstNSI	RCATGY	1 cut(s)	261
BstSFI	CTRYAG	2 cut(s)	190, 374
BstSLI	GKGCMC	2 cut(s)	46, 141
BstV1I	GCAGC	2 cut(s)	268, 273
BtsCI	GGATG	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	81, 259
CaiI	CAGNNNCTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	106, 258
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	4 cut(s)	53, 145, 218, 320
DinI	GGCGCC	1 cut(s)	365
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eam1104I	CTCTTC	2 cut(s)	219, 324
EarI	CTCTTC	2 cut(s)	219, 324
Ecl136II	GAGCTC	2 cut(s)	8, 222
Eco130I	CCWWGG	1 cut(s)	350
Eco24I	GRGCYC	2 cut(s)	10, 224
Eco53kI	GAGCTC	2 cut(s)	8, 222
Eco88I	CYCGRG	1 cut(s)	9
EcoICRI	GAGCTC	2 cut(s)	8, 222
EcoT14I	CCWWGG	1 cut(s)	350
EcoT38I	GRGCYC	2 cut(s)	10, 224
EgeI	GGCGCC	1 cut(s)	365
EheI	GGCGCC	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	2 cut(s)	109, 261
FaiI	YATR	4 cut(s)	107, 192, 204, 259
FatI	CATG	2 cut(s)	105, 257
Fnu4HI	GCNGC	3 cut(s)	25, 262, 282
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	2 cut(s)	10, 224
Fsp4HI	GCNGC	3 cut(s)	25, 262, 282
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	3 cut(s)	25, 262, 282
GsuI	CTGGAG	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	367
HapII	CCGG	1 cut(s)	248
HhaI	GCGC	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	2 cut(s)	109, 261
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HpaII	CCGG	1 cut(s)	248
Hpy166II	GTNNAC	3 cut(s)	44, 129, 139
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	3 cut(s)	44, 129, 139
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	3 cut(s)	41, 201, 295
HpyCH4V	TGCA	4 cut(s)	44, 139, 261, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 33
HpyF3I	CTNAG	4 cut(s)	53, 145, 218, 320
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	109, 261
HspAI	GCGC	1 cut(s)	364
KasI	GGCGCC	1 cut(s)	363
KpnI	GGTACC	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	265
LpnPI	CCDG	3 cut(s)	46, 261, 371
Lsp1109I	GCAGC	2 cut(s)	268, 273
MaeI	CTAG	1 cut(s)	80
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	5 cut(s)	121, 206, 260, 263, 341
MhlI	GDGCHC	4 cut(s)	10, 46, 141, 224
MluCI	AATT	1 cut(s)	324
Mly113I	GGCGCC	1 cut(s)	364
MnlI	CCTC	6 cut(s)	5, 40, 160, 174, 244, 325
MspI	CCGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	21, 33
NarI	GGCGCC	1 cut(s)	364
NdeII	GATC	1 cut(s)	265
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	109, 261
NlaIV	GGNNCC	2 cut(s)	356, 365
NspI	RCATGY	1 cut(s)	261
PaeI	GCATGC	1 cut(s)	261
PaeR7I	CTCGAG	1 cut(s)	9
PkrI	GCNGC	3 cut(s)	26, 263, 283
PluTI	GGCGCC	1 cut(s)	367
Psp124BI	GAGCTC	2 cut(s)	10, 224
PspN4I	GGNNCC	2 cut(s)	356, 365
PspXI	VCTCGAGB	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	39
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SacI	GAGCTC	2 cut(s)	10, 224
SatI	GCNGC	3 cut(s)	25, 262, 282
Sau3AI	GATC	1 cut(s)	265
SduI	GDGCHC	4 cut(s)	10, 46, 141, 224
SfcI	CTRYAG	2 cut(s)	190, 374
SfoI	GGCGCC	1 cut(s)	365
Sfr274I	CTCGAG	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	261
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	25, 181
SspDI	GGCGCC	1 cut(s)	363
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	2 cut(s)	10, 224
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	3 cut(s)	41, 201, 295
TaqI	TCGA	1 cut(s)	10
TasI	AATT	1 cut(s)	324
TauI	GCSGC	1 cut(s)	27
TseI	GCWGC	2 cut(s)	261, 281
TspDTI	ATGAA	2 cut(s)	87, 122
VneI	GTGCAC	2 cut(s)	42, 137
XceI	RCATGY	1 cut(s)	261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	357
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.