Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Reverse (-)

26540499 .. 26541035

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGATGAAGGATTCGGCTTGTTTCCAGCCTAATGTTTCTGCTTTGGCATGTGGTGTTGTAAATGATGGAATGCTGGTCCAGATTTACAGAAGTGCAGTCAGGCTCTATCTGCCCACCCAGGGTGCGCATTCTGATGGTGTTCCATTGCCTTCTCCAGTTCATGAGAGTTCTGTCTCTGCCCTTCCATTTGGAGTTGATATCAGAACACACAAGCCTTTGGTGGAAATCTCGTCTGTTGCACCTAGTGAAGGCCTACGTGTTCTTGCTTCTGGGGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

94

Amino Acids

9.72

Weight (kDa)

6.23

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	119, 248
AflIII	ACRYGT	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	76
BccI	CCATC	2 cut(s)	59, 128
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	117, 118
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 248
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	117, 118
BseLI	CCNNNNNNNGG	2 cut(s)	119, 248
BseMI	GCAATG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	119, 248
BsmAI	GTCTC	1 cut(s)	178
BsmI	GAATGC	2 cut(s)	75, 127
BsnI	GGCC	1 cut(s)	252
BspANI	GGCC	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	117, 118
Bst2UI	CCWGG	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	257
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 272
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	252
CciI	TCATGA	1 cut(s)	160
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	76
CviAII	CATG	2 cut(s)	48, 161
CviJI	RGCY	5 cut(s)	17, 28, 103, 214, 252
CviKI_1	RGCY	5 cut(s)	17, 28, 103, 214, 252
DraIII	CACNNNGTG	1 cut(s)	245
Eco147I	AGGCCT	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	199
FaeI	CATG	2 cut(s)	51, 164
FaiI	YATR	2 cut(s)	49, 162
FatI	CATG	2 cut(s)	47, 160
FspAI	RTGCGCAY	1 cut(s)	126
FspBI	CTAG	1 cut(s)	243
FspI	TGCGCA	1 cut(s)	126
GlaI	GCGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	51, 164
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	133, 203
Hpy188III	TCNNGA	2 cut(s)	79, 161
HpyAV	CCTTC	3 cut(s)	159, 191, 242
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	95, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 272
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	51, 164
HspAI	GCGC	1 cut(s)	125
LpnPI	CCDG	8 cut(s)	38, 59, 85, 92, 104, 131, 168, 255
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	256
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	119
Mva1269I	GAATGC	2 cut(s)	75, 127
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	109, 272
NlaIII	CATG	2 cut(s)	51, 164
NsbI	TGCGCA	1 cut(s)	126
NspI	RCATGY	1 cut(s)	51
PagI	TCATGA	1 cut(s)	160
PasI	CCCWGGG	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	252
PctI	GAATGC	2 cut(s)	75, 127
PfeI	GAWTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	2 cut(s)	244, 259
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	132
SseBI	AGGCCT	1 cut(s)	252
SspMI	CTAG	1 cut(s)	243
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	117
TaiI	ACGT	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	20, 149
VpaK11BI	GGWCC	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	246
XceI	RCATGY	1 cut(s)	51
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.