Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Reverse (-)

31065345 .. 31069081

Gene Structure 3737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028985

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTTGGAGAATCTGTTCAATTGTTTGTGTGGTCTATTGATGCCATTGGAGAATAGGGACATTAATGCTGGAATCAAGGAAGAAACAAATAGAAAAGATGTTGGTGATAGTTCTCTCGGTGCTGCTTCTTTGAAACCATTGAAACTCATTAAGTTTGCAAAACAAGCTGCTGAGCAGCTATTTGGCAGAGTTGATATACTAGAACTAGTTATAGTGGAATTGGCTCACATCTTTGACATTAAGGGTAAAATTGAGATGACAAATAAACTTTGTGAGAAATTGCTAAAGGAGAAGGGTCAAGCCAGCATAGCTATGAAGGCTATGGTTGCAGAAGTTTCTACTCAATCACTTGCTCAGTCTATTCTTGTGTCTATTTTACTGCAGTTGATAAAAGGAAGTACTGCGCTGGGAGTGGACACAGAGATAAAACGTGGATGTCTTGATATCTTATGCAATGTCCTTCATAAGTTTGGCAATATTATGACAACCGACCATGAGCTGCTCTTAGGTGCTCTCTTGTCTCAGTTGAGCTCCAATCAAACAAGCGTGAGGAAGAAAAGTGTGTCATGCATCGCATCACTTGCTTCAAGCTTGTCAGATGATTTGTTGGCAAAGGCTACTATTAGAGTTGTTCAGCACTTGAGCAATAAAGGCACAAAGTATAAAATGACTCAAACCTCTTTGTCCCAGCCACTTTGTGCATATCATGTGAACTCTGAGGAATTTTATCAGCAGCTCAAACTCCCTTATCATGTTGTGTCCATCATCTCTGAATCTGATATAGCTGAACCTGGAGAGAATCCTCATGTCAAAGAAGTGATGAGTCCTGCTTTTGAGTTGCAATCTAGACTAGTAACAATTTCAGCACAAGTTCAACTACTCTTGGCATCAAACAGTCCTGATATGAAAGGTACAAGGGAAAGCCTTGTTTTGATATCTAAAAAGCAAGGATGGAAGCAATTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

323

Amino Acids

35.35

Weight (kDa)

8.37

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	722
AdeI	CACNNNGTG	1 cut(s)	698
AfaI	GTAC	2 cut(s)	400, 913
AgsI	TTSAA	5 cut(s)	19, 133, 142, 588, 875
AhlI	ACTAGT	2 cut(s)	205, 850
AjnI	CCWGG	1 cut(s)	790
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	8 cut(s)	167, 178, 311, 499, 531, 591, 736, 785
AluI	AGCT	8 cut(s)	167, 178, 311, 499, 531, 591, 736, 785
Alw21I	GWGCWC	2 cut(s)	514, 533
Alw26I	GTCTC	1 cut(s)	525
ApeKI	GCWGC	5 cut(s)	122, 167, 175, 499, 733
ApoI	RAATTY	1 cut(s)	722
AseI	ATTAAT	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	533
Bbv12I	GWGCWC	2 cut(s)	514, 533
BbvI	GCAGC	5 cut(s)	109, 154, 187, 486, 745
BccI	CCATC	2 cut(s)	770, 945
BciT130I	CCWGG	1 cut(s)	792
BcoDI	GTCTC	1 cut(s)	525
BcuI	ACTAGT	2 cut(s)	205, 850
BfaI	CTAG	4 cut(s)	200, 206, 846, 851
BfmI	CTRYAG	1 cut(s)	380
BisI	GCNGC	5 cut(s)	123, 168, 176, 500, 734
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	5 cut(s)	124, 169, 177, 501, 735
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	792
BmrFI	CCNGG	1 cut(s)	792
BmsI	GCATC	4 cut(s)	30, 579, 584, 896
BpmI	CTGGAG	1 cut(s)	813
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	661
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	792
BseGI	GGATG	2 cut(s)	440, 956
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	4 cut(s)	162, 368, 536, 708
BseXI	GCAGC	5 cut(s)	109, 154, 187, 486, 745
BseYI	CCCAGC	2 cut(s)	406, 687
BsiHKAI	GWGCWC	2 cut(s)	514, 533
BslFI	GGGAC	2 cut(s)	71, 670
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	2 cut(s)	71, 670
Bsp1286I	GDGCHC	2 cut(s)	514, 533
Bsp1720I	GCTNAGC	1 cut(s)	171
BspCNI	CTCAG	4 cut(s)	163, 367, 535, 709
BspMAI	CTGCAG	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	1 cut(s)	896
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	5 cut(s)	171, 354, 505, 522, 717
BstF5I	GGATG	2 cut(s)	440, 956
BstHHI	GCGC	1 cut(s)	406
BstMAI	GTCTC	1 cut(s)	525
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 308, 317, 326, 581, 651
BstNI	CCWGG	1 cut(s)	792
BstSCI	CCNGG	1 cut(s)	790
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	5 cut(s)	109, 154, 187, 486, 745
BtgZI	GCGATG	1 cut(s)	556
BtsCI	GGATG	2 cut(s)	440, 956
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	399, 912
CviAII	CATG	5 cut(s)	494, 567, 707, 752, 806
CviQI	GTAC	2 cut(s)	399, 912
DdeI	CTNAG	5 cut(s)	171, 354, 505, 522, 717
DraIII	CACNNNGTG	1 cut(s)	698
Ecl136II	GAGCTC	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	533
Eco32I	GATATC	2 cut(s)	445, 936
Eco53kI	GAGCTC	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	790
EcoRV	GATATC	2 cut(s)	445, 936
EcoT22I	ATGCAT	1 cut(s)	572
EcoT38I	GRGCYC	1 cut(s)	533
FaeI	CATG	5 cut(s)	497, 570, 710, 755, 809
FaqI	GGGAC	2 cut(s)	71, 670
FatI	CATG	5 cut(s)	493, 566, 706, 751, 805
Fnu4HI	GCNGC	5 cut(s)	123, 168, 176, 500, 734
FokI	GGATG	2 cut(s)	447, 963
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	5 cut(s)	123, 168, 176, 500, 734
FspBI	CTAG	4 cut(s)	200, 206, 846, 851
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	5 cut(s)	123, 168, 176, 500, 734
GsaI	CCCAGC	2 cut(s)	410, 691
GsuI	CTGGAG	1 cut(s)	813
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	5 cut(s)	497, 570, 710, 755, 809
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	589
HinfI	GANTC	6 cut(s)	10, 72, 670, 773, 799, 823
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	415, 712
Hpy188I	TCNGA	4 cut(s)	598, 718, 772, 778
Hpy188III	TCNNGA	3 cut(s)	440, 846, 899
Hpy8I	GTNNAC	2 cut(s)	415, 712
HpyAV	CCTTC	3 cut(s)	286, 310, 470
HpyCH4III	ACNGT	1 cut(s)	896
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	7 cut(s)	158, 329, 382, 453, 570, 701, 841
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 308, 317, 326, 581, 651
HpyF3I	CTNAG	5 cut(s)	171, 354, 505, 522, 717
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	5 cut(s)	497, 570, 710, 755, 809
HspAI	GCGC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	536
LpnPI	CCDG	8 cut(s)	54, 316, 392, 701, 777, 804, 840, 912
Lsp1109I	GCAGC	5 cut(s)	109, 154, 187, 486, 745
LweI	GCATC	4 cut(s)	30, 579, 584, 896
MaeI	CTAG	4 cut(s)	200, 206, 846, 851
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	1 cut(s)	853
MboII	GAAGA	2 cut(s)	92, 565
MfeI	CAATTG	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	514, 533
MluCI	AATT	7 cut(s)	19, 218, 249, 278, 722, 858, 959
MlyI	GAGTC	2 cut(s)	664, 832
MnlI	CCTC	4 cut(s)	543, 688, 712, 813
Mph1103I	ATGCAT	1 cut(s)	572
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	3 cut(s)	63, 150, 240
MslI	CAYNNNNRTG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	792
MunI	CAATTG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	6 cut(s)	164, 308, 317, 326, 581, 651
NlaIII	CATG	5 cut(s)	497, 570, 710, 755, 809
NsiI	ATGCAT	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	10, 72, 773, 799
PkrI	GCNGC	5 cut(s)	124, 169, 177, 501, 735
PleI	GAGTC	2 cut(s)	664, 831
PpsI	GAGTC	2 cut(s)	664, 831
PshBI	ATTAAT	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	790
PspFI	CCCAGC	2 cut(s)	406, 687
PspGI	CCWGG	1 cut(s)	790
PstI	CTGCAG	1 cut(s)	384
RsaI	GTAC	2 cut(s)	400, 913
RsaNI	GTAC	2 cut(s)	399, 912
RseI	CAYNNNNRTG	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	63, 150, 240
SatI	GCNGC	5 cut(s)	123, 168, 176, 500, 734
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	2 cut(s)	664, 832
ScrFI	CCNGG	1 cut(s)	792
SduI	GDGCHC	2 cut(s)	514, 533
SfaNI	GCATC	4 cut(s)	30, 579, 584, 896
SfcI	CTRYAG	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SpeI	ACTAGT	2 cut(s)	205, 850
Sse9I	AATT	7 cut(s)	19, 218, 249, 278, 722, 858, 959
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	4 cut(s)	200, 206, 846, 851
SstI	GAGCTC	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	790
TaaI	ACNGT	1 cut(s)	896
TaiI	ACGT	1 cut(s)	433
TasI	AATT	7 cut(s)	19, 218, 249, 278, 722, 858, 959
TatI	WGTACW	1 cut(s)	398
TfiI	GAWTC	4 cut(s)	10, 72, 773, 799
Tru1I	TTAA	3 cut(s)	63, 150, 240
Tru9I	TTAA	3 cut(s)	63, 150, 240
TseI	GCWGC	5 cut(s)	122, 167, 175, 499, 733
TspDTI	ATGAA	3 cut(s)	329, 452, 920
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	1 cut(s)	722
XbaI	TCTAGA	1 cut(s)	845
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	4 cut(s)	200, 206, 846, 851
ZrmI	AGTACT	1 cut(s)	400
Zsp2I	ATGCAT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.