Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001141.1

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

35822 .. 42236

Gene Structure 6415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001141.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atgaataatgtggtcaatgaaaacaactatagagatctacttcatgttgcaagcgagccgcttgataatggcattgatccacttcatgattggattatgcctgcacacctcgatgatgaagctggaaggcctcttccacaagttgtagaaactgcaactaatgctggaatcaacgtagagagagtcttatctgaagaaagtaagctccaaaactggttctcaatggcctctgtagctttcttcactccaccggcactgaaactggtcaccggaaatggcttcttaaagaaagagctcgatccctcgccgcaattgaccctaatgctagcggagattcaagaacaacagggcctaatgaagacatacgagatcacgatcaaggagcccgaagctcaccgcaaaggtttaggcatttccacattcaaatccgaactccaagaggatttggtttcggtgaagcaagagttgaaagtggagattgatttgaatgacaatgatgaggaagaggatggtagtgtggatcttttggttcatggcgatggctgcaagggtagtgagtgtagggaagacaatggtgaccgattgtgtgacaacaatcgggtattcgaatcttgcaacaggaattggggcaacggtgggatggtggtggcggtgctatgtgctgcaactattgttgggctcaagtcactaattgggcctattttgggcctggtaggttacggcggtgggatatccggcaactattactgctctgggtcgtatcatcttcaaggtaactcctatagccaagctcagatggtgactaatttcacacaactaaacccttacccacctccgccacacaacccttctgcaaccattatcaatggccacttactccctcaccaatttccatgtgttcctcggactcactcacagttcttcccacctccatacctgcaaccgattcatcccattgctccgcagtcactcaccataactcctcaaagcccatctatctctccttaccactcacctcatcctaccccaaatatctggattcatccttcaattccaaacgttcagtcgcctgcagcccccacttttatgccccagcctcagtttccaaatcccaaacctccattgtcttttcgttccgtgggcgactgtgagcccctagctctattcaagggtcggatccaaaccataccatcttcctcttctttatcatccgacccacaaacctctcttgcagaggcaacaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

415

Amino Acids

45.37

Weight (kDa)

5.07

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	945
AciI	CCGC	8 cut(s)	59, 308, 329, 397, 650, 723, 836, 962
AclI	AACGTT	1 cut(s)	1059
AclWI	GGATC	5 cut(s)	71, 293, 528, 1171, 1184
AcoI	YGGCCR	1 cut(s)	868
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	7 cut(s)	338, 424, 469, 487, 770, 1050, 1168
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	7 cut(s)	122, 205, 236, 295, 392, 791, 1160
AluI	AGCT	7 cut(s)	122, 205, 236, 295, 392, 791, 1160
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	5 cut(s)	71, 293, 528, 1171, 1184
AoxI	GGCC	6 cut(s)	128, 225, 349, 695, 706, 868
ApeKI	GCWGC	3 cut(s)	543, 662, 1073
ArsI	GACNNNNNNTTYG	2 cut(s)	1049, 1081
AspS9I	GGNCC	3 cut(s)	349, 695, 706
AsuHPI	GGTGA	8 cut(s)	259, 386, 466, 587, 811, 875, 964, 1005
AsuII	TTCGAA	1 cut(s)	606
AsuNHI	GCTAGC	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	870
BamHI	GGATCC	1 cut(s)	1176
BanII	GRGCYC	4 cut(s)	297, 387, 681, 1155
BbsI	GAAGAC	2 cut(s)	365, 573
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	530, 649, 1085
BccI	CCATC	6 cut(s)	503, 533, 634, 790, 1000, 1198
BceAI	ACGGC	1 cut(s)	736
BciT130I	CCWGG	1 cut(s)	710
BfaI	CTAG	2 cut(s)	326, 1157
BfmI	CTRYAG	4 cut(s)	28, 231, 781, 1071
BfuAI	ACCTGC	1 cut(s)	945
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	5 cut(s)	59, 308, 544, 663, 1074
BlsI	GCNGC	5 cut(s)	60, 309, 545, 664, 1075
Bme1390I	CCNGG	1 cut(s)	710
BmgT120I	GGNCC	3 cut(s)	349, 695, 706
BmiI	GGNNCC	2 cut(s)	384, 1178
BmrFI	CCNGG	1 cut(s)	710
BmtI	GCTAGC	1 cut(s)	329
BpiI	GAAGAC	2 cut(s)	365, 573
Bpu14I	TTCGAA	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	665
BsaBI	GATNNNNATC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	902, 1137
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	964, 994
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	2 cut(s)	218, 267
Bse3DI	GCAATG	1 cut(s)	954
Bse8I	GATNNNNATC	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	2 cut(s)	902, 1137
BseGI	GGATG	6 cut(s)	514, 645, 949, 1018, 1042, 1208
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	2 cut(s)	806, 1112
BseNI	ACTGG	2 cut(s)	218, 267
BseRI	GAGGAG	1 cut(s)	972
BseXI	GCAGC	3 cut(s)	530, 649, 1085
BseYI	CCCAGC	1 cut(s)	1092
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	6 cut(s)	130, 227, 351, 697, 708, 870
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	251, 270, 735
BslI	CCNNNNNNNGG	1 cut(s)	704
BsnI	GGCC	6 cut(s)	130, 227, 351, 697, 708, 870
Bsp119I	TTCGAA	1 cut(s)	606
Bsp1286I	GDGCHC	4 cut(s)	297, 387, 681, 1155
Bsp143I	GATC	7 cut(s)	34, 76, 298, 369, 375, 520, 1176
BspACI	CCGC	8 cut(s)	59, 308, 329, 397, 650, 723, 836, 962
BspANI	GGCC	6 cut(s)	130, 227, 351, 697, 708, 870
BspCNI	CTCAG	2 cut(s)	805, 1111
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	384, 1178
BspMAI	CTGCAG	1 cut(s)	1075
BspMI	ACCTGC	1 cut(s)	945
BspOI	GCTAGC	1 cut(s)	329
BspPI	GGATC	5 cut(s)	71, 293, 528, 1171, 1184
BspT104I	TTCGAA	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	954
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	218, 267
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	902, 1137
BssMI	GATC	7 cut(s)	34, 76, 298, 369, 375, 520, 1176
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	3 cut(s)	635, 918, 1148
Bst6I	CTCTTC	3 cut(s)	138, 498, 1204
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	606
BstC8I	GCNNGC	5 cut(s)	52, 56, 102, 327, 1071
BstDEI	CTNAG	2 cut(s)	792, 1098
BstDSI	CCRYGG	1 cut(s)	1137
BstEII	GGTNACC	2 cut(s)	265, 575
BstF5I	GGATG	6 cut(s)	514, 645, 949, 1018, 1042, 1208
BstKTI	GATC	7 cut(s)	37, 79, 301, 372, 378, 523, 1179
BstMBI	GATC	7 cut(s)	34, 76, 298, 369, 375, 520, 1176
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 233, 543
BstNI	CCWGG	1 cut(s)	710
BstPI	GGTNACC	2 cut(s)	265, 575
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	4 cut(s)	28, 231, 781, 1071
BstV1I	GCAGC	3 cut(s)	530, 649, 1085
BstV2I	GAAGAC	2 cut(s)	365, 573
BstX2I	RGATCY	3 cut(s)	34, 520, 1176
BstXI	CCANNNNNNTGG	1 cut(s)	1035
BstYI	RGATCY	3 cut(s)	34, 520, 1176
BsuRI	GGCC	6 cut(s)	130, 227, 351, 697, 708, 870
BtgI	CCRYGG	1 cut(s)	1137
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	6 cut(s)	514, 645, 949, 1018, 1042, 1208
BtsIMutI	CAGTG	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	945
Cac8I	GCNNGC	5 cut(s)	52, 56, 102, 327, 1071
CciI	TCATGA	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	3 cut(s)	349, 695, 706
CviAII	CATG	4 cut(s)	44, 86, 533, 894
DdeI	CTNAG	2 cut(s)	792, 1098
DpnI	GATC	7 cut(s)	36, 78, 300, 371, 377, 522, 1178
DpnII	GATC	7 cut(s)	34, 76, 298, 369, 375, 520, 1176
EaeI	YGGCCR	1 cut(s)	868
Eam1104I	CTCTTC	3 cut(s)	138, 498, 1204
EarI	CTCTTC	3 cut(s)	138, 498, 1204
EciI	GGCGGA	1 cut(s)	825
Ecl136II	GAGCTC	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	4 cut(s)	297, 387, 681, 1155
Eco32I	GATATC	1 cut(s)	732
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	213
Eco91I	GGTNACC	2 cut(s)	265, 575
EcoICRI	GAGCTC	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	349
EcoO65I	GGTNACC	2 cut(s)	265, 575
EcoRII	CCWGG	1 cut(s)	708
EcoRV	GATATC	1 cut(s)	732
EcoT38I	GRGCYC	4 cut(s)	297, 387, 681, 1155
FaeI	CATG	4 cut(s)	47, 89, 536, 897
FatI	CATG	4 cut(s)	43, 85, 532, 893
Fnu4HI	GCNGC	5 cut(s)	59, 308, 544, 663, 1074
FokI	GGATG	6 cut(s)	521, 652, 936, 1005, 1029, 1195
FriOI	GRGCYC	4 cut(s)	297, 387, 681, 1155
Fsp4HI	GCNGC	5 cut(s)	59, 308, 544, 663, 1074
FspBI	CTAG	2 cut(s)	326, 1157
GluI	GCNGC	5 cut(s)	59, 308, 544, 663, 1074
GsaI	CCCAGC	1 cut(s)	1096
HaeIII	GGCC	6 cut(s)	130, 227, 351, 697, 708, 870
HapII	CCGG	3 cut(s)	251, 270, 735
Hin1II	CATG	4 cut(s)	47, 89, 536, 897
HinfI	GANTC	7 cut(s)	168, 183, 334, 608, 907, 946, 1039
HpaII	CCGG	3 cut(s)	251, 270, 735
HphI	GGTGA	8 cut(s)	259, 386, 466, 587, 811, 875, 964, 1005
Hpy188I	TCNGA	6 cut(s)	193, 430, 795, 906, 1176, 1213
Hpy188III	TCNNGA	4 cut(s)	86, 338, 373, 1036
HpyAV	CCTTC	3 cut(s)	120, 858, 1056
HpyCH4III	ACNGT	3 cut(s)	635, 918, 1148
HpyCH4IV	ACGT	2 cut(s)	174, 1059
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 233, 543
HpyF3I	CTNAG	2 cut(s)	792, 1098
HpySE526I	ACGT	2 cut(s)	174, 1059
Hsp92II	CATG	4 cut(s)	47, 89, 536, 897
Kzo9I	GATC	7 cut(s)	34, 76, 298, 369, 375, 520, 1176
LmnI	GCTCC	3 cut(s)	210, 382, 964
Lsp1109I	GCAGC	3 cut(s)	530, 649, 1085
MaeI	CTAG	2 cut(s)	326, 1157
MaeII	ACGT	2 cut(s)	174, 1059
MaeIII	GTNAC	8 cut(s)	265, 575, 587, 684, 716, 773, 799, 966
MalI	GATC	7 cut(s)	36, 78, 300, 371, 377, 522, 1178
MboI	GATC	7 cut(s)	34, 76, 298, 369, 375, 520, 1176
MfeI	CAATTG	1 cut(s)	311
MflI	RGATCY	3 cut(s)	34, 520, 1176
MhlI	GDGCHC	4 cut(s)	297, 387, 681, 1155
MlsI	TGGCCA	1 cut(s)	870
MluCI	AATT	7 cut(s)	311, 622, 690, 805, 887, 1050, 1243
MluNI	TGGCCA	1 cut(s)	870
MlyI	GAGTC	2 cut(s)	192, 901
MmeI	TCCRAC	2 cut(s)	1154, 1236
Mox20I	TGGCCA	1 cut(s)	870
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	2 cut(s)	284, 1246
MslI	CAYNNNNRTG	3 cut(s)	111, 537, 1085
Msp20I	TGGCCA	1 cut(s)	870
MspI	CCGG	3 cut(s)	251, 270, 735
MspR9I	CCNGG	1 cut(s)	710
MunI	CAATTG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	3 cut(s)	161, 233, 543
NdeII	GATC	7 cut(s)	34, 76, 298, 369, 375, 520, 1176
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	4 cut(s)	47, 89, 536, 897
NlaIV	GGNNCC	2 cut(s)	384, 1178
NmuCI	GTSAC	6 cut(s)	265, 575, 587, 684, 799, 966
NspV	TTCGAA	1 cut(s)	606
PagI	TCATGA	1 cut(s)	85
PceI	AGGCCT	1 cut(s)	130
PfeI	GAWTC	5 cut(s)	168, 334, 608, 946, 1039
PkrI	GCNGC	5 cut(s)	60, 309, 545, 664, 1075
PleI	GAGTC	2 cut(s)	191, 901
PpsI	GAGTC	2 cut(s)	191, 901
Psp124BI	GAGCTC	1 cut(s)	297
Psp1406I	AACGTT	1 cut(s)	1059
Psp6I	CCWGG	1 cut(s)	708
PspEI	GGTNACC	2 cut(s)	265, 575
PspFI	CCCAGC	1 cut(s)	1092
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	384, 1178
PspPI	GGNCC	3 cut(s)	349, 695, 706
PstI	CTGCAG	1 cut(s)	1075
PsuI	RGATCY	3 cut(s)	34, 520, 1176
RseI	CAYNNNNRTG	3 cut(s)	111, 537, 1085
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	284, 1246
SatI	GCNGC	5 cut(s)	59, 308, 544, 663, 1074
Sau3AI	GATC	7 cut(s)	34, 76, 298, 369, 375, 520, 1176
Sau96I	GGNCC	3 cut(s)	349, 695, 706
SchI	GAGTC	2 cut(s)	192, 901
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	4 cut(s)	297, 387, 681, 1155
SfcI	CTRYAG	4 cut(s)	28, 231, 781, 1071
SfuI	TTCGAA	1 cut(s)	606
SmiMI	CAYNNNNRTG	3 cut(s)	111, 537, 1085
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	7 cut(s)	311, 622, 690, 805, 887, 1050, 1243
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	8 cut(s)	59, 308, 329, 397, 650, 723, 836, 962
SspMI	CTAG	2 cut(s)	326, 1157
SstI	GAGCTC	1 cut(s)	297
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	708
TaaI	ACNGT	3 cut(s)	635, 918, 1148
TaiI	ACGT	2 cut(s)	177, 1062
TaqI	TCGA	3 cut(s)	111, 297, 606
TaqII	GACCGA	1 cut(s)	594
TasI	AATT	7 cut(s)	311, 622, 690, 805, 887, 1050, 1243
TauI	GCSGC	2 cut(s)	61, 310
TfiI	GAWTC	5 cut(s)	168, 334, 608, 946, 1039
Tru1I	TTAA	2 cut(s)	284, 1246
Tru9I	TTAA	2 cut(s)	284, 1246
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	6 cut(s)	265, 575, 587, 684, 799, 966
TseI	GCWGC	3 cut(s)	543, 662, 1073
Tsp45I	GTSAC	6 cut(s)	265, 575, 587, 684, 799, 966
TspDTI	ATGAA	9 cut(s)	17, 32, 33, 74, 132, 371, 521, 938, 1031
TspGWI	ACGGA	1 cut(s)	1126
TspRI	CASTG	1 cut(s)	261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	87
XspI	CTAG	2 cut(s)	326, 1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.