Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Reverse (-)

22960230 .. 22961114

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29863.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAATCTGGGAGCTGGGCAACCGGCGATTCCGACGCTCAGCGTCGAACCTCTTGTGCTCGACGAAGATTTGTTTCTTCTTGCAATGAGCCGTGCACTGGATAAAACTTTACCGTCGCTTCAATCCAAGCTGCAAAGTATGATTGAAAATGTGTTCGAGCAATTTCAATTGACAACACCACCACCAGCCTTGTTGCAACCAGTCTACTACCAGCAGCGATCACTGGAGCAATCATCAACTCCAGTTTCTGATCCCAAAACTCAAATTGAGATTGTTCACTCTCATCTCTGGAAGGCTCGAAGCAAGCAAGTGGCTCTCAAGTCGACTGCGGCCACCGGAGGAGTGAAGAAACCGCACAGTTTCAGGCTAGGAGCATCCACGCTCCACAAGACAGCCAAATACCAGAAGCGCAATTTTCGGAGTTTAGCTGCGTCTCTTCTACTCGAGGATGCCATTTCGGCTCAGTCAAACCTTAACCCTACTTCTGTTTGCCTAGTGAGTGATTCTGGCACTAGTATTCCTAATCTCAATTTTGTGAGTACTGACTGCGTTGGCGTAGATTCTGTGCTTGTTGCAAAATTGAATGGGAGTGATGTGAATTTCGGAAATGGAGAGGATGAGACTTTTGACAGGAAGGCTAAGGTGTATAGTGGAGATGTGAAAGAGCTTAGTGAGCTTGATAGTGTTAGTGTTAAGCAAGATGATCTGCAAGGACCAAATTCGGGTGAGAATGGGAGAGAATGCCATGCACTCCACCTGCTTGATGAAATGCCTCAGTCAAAGGGGTTGTGTAGTGTAGGGGGGGACTGTTGCAACTCTTACAAGTATTCGAGACAAAGGTGGGGGACTTGCTCACCAACCTGTAGAAGTGGCATTTGGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

31.92

Weight (kDa)

6.31

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	765
Acc36I	ACCTGC	1 cut(s)	765
AccI	GTMKAC	2 cut(s)	204, 323
AciI	CCGC	2 cut(s)	329, 353
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	598, 718
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	97, 722
AgsI	TTSAA	4 cut(s)	122, 146, 167, 583
AhlI	ACTAGT	1 cut(s)	512
AjuI	GAANNNNNNNTTGG	1 cut(s)	859
AluBI	AGCT	5 cut(s)	14, 130, 428, 667, 676
AluI	AGCT	5 cut(s)	14, 130, 428, 667, 676
Alw21I	GWGCWC	2 cut(s)	60, 97
Alw26I	GTCTC	3 cut(s)	438, 614, 826
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	330
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	130, 214, 428
ApoI	RAATTY	2 cut(s)	598, 718
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	2 cut(s)	737, 846
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	713
BaeGI	GKGCMC	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	60, 97
BbvI	GCAGC	3 cut(s)	117, 226, 415
BceAI	ACGGC	1 cut(s)	75
BcoDI	GTCTC	3 cut(s)	438, 614, 826
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	4 cut(s)	368, 494, 513, 883
BfmI	CTRYAG	1 cut(s)	862
BfuAI	ACCTGC	1 cut(s)	765
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	4 cut(s)	131, 215, 330, 429
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	4 cut(s)	132, 216, 331, 430
BmcAI	AGTACT	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	713
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	713
BmsI	GCATC	2 cut(s)	383, 439
BpmI	CTGGAG	2 cut(s)	225, 245
Bpu10I	CCTNAGC	1 cut(s)	639
Bpu1102I	GCTNAGC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 722
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	4 cut(s)	102, 200, 228, 242
Bse3DI	GCAATG	1 cut(s)	90
BseGI	GGATG	3 cut(s)	374, 454, 622
BseLI	CCNNNNNNNGG	2 cut(s)	97, 722
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	3 cut(s)	52, 476, 788
BseNI	ACTGG	4 cut(s)	102, 200, 228, 242
BseRI	GAGGAG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	117, 226, 415
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	60, 97
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	23, 336
BslFI	GGGAC	2 cut(s)	818, 859
BslI	CCNNNNNNNGG	2 cut(s)	97, 722
BsmAI	GTCTC	3 cut(s)	438, 614, 826
BsmBI	CGTCTC	1 cut(s)	438
BsmFI	GGGAC	2 cut(s)	818, 859
BsmI	GAATGC	1 cut(s)	746
BsnI	GGCC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	60, 97
Bsp143I	GATC	3 cut(s)	218, 250, 703
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	2 cut(s)	329, 353
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	3 cut(s)	51, 475, 787
BspMI	ACCTGC	1 cut(s)	765
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	4 cut(s)	102, 200, 228, 242
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	3 cut(s)	218, 250, 703
Bst4CI	ACNGT	3 cut(s)	114, 359, 809
Bst6I	CTCTTC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	5 cut(s)	38, 462, 639, 668, 774
BstF5I	GGATG	3 cut(s)	374, 454, 622
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	3 cut(s)	221, 253, 706
BstMAI	GTCTC	3 cut(s)	438, 614, 826
BstMBI	GATC	3 cut(s)	218, 250, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 673, 879
BstSFI	CTRYAG	1 cut(s)	862
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	117, 226, 415
BsuRI	GGCC	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	374, 454, 622
BtsIMutI	CAGTG	2 cut(s)	95, 221
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	1 cut(s)	305
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	713
CseI	GACGC	3 cut(s)	31, 43, 420
Csp6I	GTAC	1 cut(s)	540
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	1 cut(s)	746
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	5 cut(s)	38, 462, 639, 668, 774
DpnI	GATC	3 cut(s)	220, 252, 705
DpnII	GATC	3 cut(s)	218, 250, 703
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	713
Eco88I	CYCGRG	1 cut(s)	443
Esp3I	CGTCTC	1 cut(s)	438
FaeI	CATG	1 cut(s)	749
FaiI	YATR	3 cut(s)	140, 648, 747
FaqI	GGGAC	2 cut(s)	818, 859
FatI	CATG	1 cut(s)	745
FblI	GTMKAC	2 cut(s)	204, 323
Fnu4HI	GCNGC	4 cut(s)	131, 215, 330, 429
FokI	GGATG	3 cut(s)	361, 461, 629
Fsp4HI	GCNGC	4 cut(s)	131, 215, 330, 429
FspBI	CTAG	4 cut(s)	368, 494, 513, 883
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	4 cut(s)	131, 215, 330, 429
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	2 cut(s)	225, 245
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	2 cut(s)	23, 336
HgaI	GACGC	3 cut(s)	31, 43, 420
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	1 cut(s)	749
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	4 cut(s)	4, 28, 503, 560
HpaII	CCGG	2 cut(s)	23, 336
HphI	GGTGA	2 cut(s)	737, 846
Hpy166II	GTNNAC	4 cut(s)	95, 205, 277, 324
Hpy188I	TCNGA	4 cut(s)	33, 250, 420, 605
Hpy188III	TCNNGA	2 cut(s)	289, 831
Hpy8I	GTNNAC	4 cut(s)	95, 205, 277, 324
Hpy99I	CGWCG	4 cut(s)	37, 47, 65, 118
HpyAV	CCTTC	2 cut(s)	286, 628
HpyCH4III	ACNGT	3 cut(s)	114, 359, 809
HpyCH4V	TGCA	8 cut(s)	83, 95, 133, 196, 575, 709, 749, 813
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 673, 879
HpyF3I	CTNAG	5 cut(s)	38, 462, 639, 668, 774
Hsp92II	CATG	1 cut(s)	749
HspAI	GCGC	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	218, 250, 703
LmnI	GCTCC	4 cut(s)	11, 226, 371, 387
Lsp1109I	GCAGC	3 cut(s)	117, 226, 415
LweI	GCATC	2 cut(s)	383, 439
MaeI	CTAG	4 cut(s)	368, 494, 513, 883
MalI	GATC	3 cut(s)	220, 252, 705
MboI	GATC	3 cut(s)	218, 250, 703
MboII	GAAGA	4 cut(s)	68, 77, 358, 428
MfeI	CAATTG	1 cut(s)	167
MhlI	GDGCHC	2 cut(s)	60, 97
MluCI	AATT	8 cut(s)	161, 167, 264, 412, 529, 578, 598, 718
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	5 cut(s)	60, 332, 439, 607, 783
MseI	TTAA	2 cut(s)	474, 693
MspI	CCGG	2 cut(s)	23, 336
MunI	CAATTG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	746
MwoI	GCNNNNNNNGC	3 cut(s)	458, 673, 879
NdeII	GATC	3 cut(s)	218, 250, 703
NlaIII	CATG	1 cut(s)	749
PaeR7I	CTCGAG	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	765
PctI	GAATGC	1 cut(s)	746
PfeI	GAWTC	4 cut(s)	4, 28, 503, 560
PkrI	GCNGC	4 cut(s)	132, 216, 331, 430
PspFI	CCCAGC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	713
PspXI	VCTCGAGB	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SalI	GTCGAC	1 cut(s)	322
SaqAI	TTAA	2 cut(s)	474, 693
SatI	GCNGC	4 cut(s)	131, 215, 330, 429
Sau3AI	GATC	3 cut(s)	218, 250, 703
Sau96I	GGNCC	1 cut(s)	713
ScaI	AGTACT	1 cut(s)	541
SduI	GDGCHC	2 cut(s)	60, 97
SfaNI	GCATC	2 cut(s)	383, 439
SfcI	CTRYAG	1 cut(s)	862
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	713
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	317, 443
SmoI	CTYRAG	2 cut(s)	317, 443
SpeI	ACTAGT	1 cut(s)	512
Sse9I	AATT	8 cut(s)	161, 167, 264, 412, 529, 578, 598, 718
SsiI	CCGC	2 cut(s)	329, 353
SspMI	CTAG	4 cut(s)	368, 494, 513, 883
TaaI	ACNGT	3 cut(s)	114, 359, 809
TaqI	TCGA	7 cut(s)	45, 60, 156, 298, 323, 444, 830
TasI	AATT	8 cut(s)	161, 167, 264, 412, 529, 578, 598, 718
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	4 cut(s)	4, 28, 503, 560
Tru1I	TTAA	2 cut(s)	474, 693
Tru9I	TTAA	2 cut(s)	474, 693
TscAI	CASTG	2 cut(s)	102, 228
TseI	GCWGC	3 cut(s)	130, 214, 428
TspDTI	ATGAA	2 cut(s)	17, 780
TspRI	CASTG	2 cut(s)	102, 228
VneI	GTGCAC	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	713
XapI	RAATTY	2 cut(s)	598, 718
XhoI	CTCGAG	1 cut(s)	443
XmiI	GTMKAC	2 cut(s)	204, 323
XspI	CTAG	4 cut(s)	368, 494, 513, 883
ZrmI	AGTACT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.