Rroxscaffold_4G00314270

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
38271708 .. 38273251
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314270.1

Sequence Viewer

Length: 579 bp
ATGGAGACAAAAGCAAACATTGTTGAGAAGATGTTTGATGGAAATTGGAAGTGGAAATCAGCAACAAGAAATGGAGTCGAATGGTGTGAAGAACCTGAAATGCTTCTTTGGGGTTATTCGGATCGGGTGACACACAAGAAGCATTTCGGTTCTTCACACCATTCGACTCCATTTCTTATTGCTGATTACCGCCATGCAAGGTCACCCAATGCTTTTGGAGCTACCTCTAAATGGCAATTAAATAGTTTGGGATCAGGTGAACAATTTCTACATGTTGATGATTATGTCCTTGCCATTCTCATAAAAGAAAGACTCTGTTGTACCTCATGGTTCAATACCTATATTAATACACTACCAAGTGAACCTCACACCGGGACAAATTATGGAGTTATGAAAGTGATGGGCGTGAAGGAAGCCATGCTGTTGGGTAAGGTAATTTTATGGAATGGAAAATATTCAAAAAATGATGAAAATGATGTTATGGTGCAAGTTTTAGGTGCAGCCCTCTCTTGTCGATTCAAGGATATGCAAGATGGAATTACACTCGTTAAAACGCCAATCAAATACTCGGTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.87

Weight (kDa)

8.29

Isoelectric Point (pI)

23.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 190
AclWI GGATC 2 cut(s) 129, 259
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 231, 371
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 3 cut(s) 334, 459, 520
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
AlwI GGATC 2 cut(s) 129, 259
ApeKI GCWGC 1 cut(s) 500
AseI ATTAAT 1 cut(s) 345
Asp700I GAANNNNTTC 4 cut(s) 102, 143, 264, 454
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 3 cut(s) 139, 195, 269
BbvI GCAGC 1 cut(s) 512
BccI CCATC 3 cut(s) 32, 394, 527
BcnI CCSGG 1 cut(s) 373
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
Bme1390I CCNGG 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 373
BpuMI CCSGG 1 cut(s) 373
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 371
BseLI CCNNNNNNNGG 2 cut(s) 231, 371
BseXI GCAGC 1 cut(s) 512
BsgI GTGCAG 1 cut(s) 519
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 231, 371
BsmFI GGGAC 1 cut(s) 388
Bsp143I GATC 2 cut(s) 121, 251
BspACI CCGC 1 cut(s) 190
BspPI GGATC 2 cut(s) 129, 259
BssMI GATC 2 cut(s) 121, 251
BstEII GGTNACC 1 cut(s) 201
BstKTI GATC 2 cut(s) 124, 254
BstMBI GATC 2 cut(s) 121, 251
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 275
BstPI GGTNACC 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 512
BstXI CCANNNNNNTGG 1 cut(s) 424
Csp6I GTAC 1 cut(s) 321
CviAII CATG 4 cut(s) 194, 272, 327, 418
CviJI RGCY 3 cut(s) 221, 416, 503
CviKI_1 RGCY 3 cut(s) 221, 416, 503
CviQI GTAC 1 cut(s) 321
DpnI GATC 2 cut(s) 123, 253
DpnII GATC 2 cut(s) 121, 251
Eco91I GGTNACC 1 cut(s) 201
EcoO65I GGTNACC 1 cut(s) 201
FaeI CATG 4 cut(s) 197, 275, 330, 421
FaqI GGGAC 1 cut(s) 388
FatI CATG 4 cut(s) 193, 271, 326, 417
Fnu4HI GCNGC 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 501
GluI GCNGC 1 cut(s) 501
HapII CCGG 1 cut(s) 372
Hin1II CATG 4 cut(s) 197, 275, 330, 421
HinfI GANTC 4 cut(s) 75, 166, 312, 516
HpaII CCGG 1 cut(s) 372
HphI GGTGA 3 cut(s) 139, 195, 269
Hpy166II GTNNAC 2 cut(s) 260, 362
Hpy188I TCNGA 1 cut(s) 121
Hpy8I GTNNAC 2 cut(s) 260, 362
HpyAV CCTTC 1 cut(s) 403
HpyCH4V TGCA 4 cut(s) 197, 487, 500, 529
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
Hsp92II CATG 4 cut(s) 197, 275, 330, 421
Kzo9I GATC 2 cut(s) 121, 251
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 3 cut(s) 108, 240, 385
Lsp1109I GCAGC 1 cut(s) 512
MaeIII GTNAC 2 cut(s) 127, 201
MalI GATC 2 cut(s) 123, 253
MboI GATC 2 cut(s) 121, 251
MboII GAAGA 3 cut(s) 40, 101, 144
MluCI AATT 6 cut(s) 43, 236, 263, 379, 435, 537
MlyI GAGTC 3 cut(s) 84, 160, 306
MnlI CCTC 4 cut(s) 235, 334, 375, 515
MroXI GAANNNNTTC 4 cut(s) 102, 143, 264, 454
MseI TTAA 3 cut(s) 239, 345, 549
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 373
NdeII GATC 2 cut(s) 121, 251
NlaIII CATG 4 cut(s) 197, 275, 330, 421
NmuCI GTSAC 2 cut(s) 127, 201
NspI RCATGY 1 cut(s) 275
PciI ACATGT 1 cut(s) 271
PdmI GAANNNNTTC 4 cut(s) 102, 143, 264, 454
PfeI GAWTC 1 cut(s) 516
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 3 cut(s) 83, 160, 306
PpsI GAGTC 3 cut(s) 83, 160, 306
PscI ACATGT 1 cut(s) 271
PshBI ATTAAT 1 cut(s) 345
PspEI GGTNACC 1 cut(s) 201
PsrI GAACNNNNNNTAC 2 cut(s) 252, 284
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 3 cut(s) 239, 345, 549
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 2 cut(s) 121, 251
SchI GAGTC 3 cut(s) 84, 160, 306
ScrFI CCNGG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 6 cut(s) 43, 236, 263, 379, 435, 537
SsiI CCGC 1 cut(s) 190
SspI AATATT 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 371
TaqI TCGA 3 cut(s) 78, 164, 514
TasI AATT 6 cut(s) 43, 236, 263, 379, 435, 537
TfiI GAWTC 1 cut(s) 516
Tru1I TTAA 3 cut(s) 239, 345, 549
Tru9I TTAA 3 cut(s) 239, 345, 549
TseFI GTSAC 2 cut(s) 127, 201
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 2 cut(s) 127, 201
TspDTI ATGAA 2 cut(s) 407, 483
VspI ATTAAT 1 cut(s) 345
XceI RCATGY 1 cut(s) 275
XmnI GAANNNNTTC 4 cut(s) 102, 143, 264, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.