Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

31117889 .. 31119052

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g39361.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTTTCTGGGAGCTGGGCAACCGGCGATTCCTCCGCTTGGGGTCGAACCTCTTGTGTCCGGCGAGCTTGTTAACTCTAAGTACGAGCTCCAGGCGCATCGGGAGGAAACGAGCGCTAGGTTTGGGTTCATGAGGACGAGAGGAGCTGGTAATCCTTCACCATGCTCATCATCGCCGCTGCGTCCACTAGATCCAATCGATTTTAGGAGGAGACTCTTAATTGATAAGGAAGAGATGAAGGAAAAGGAAGCTGCGTTTCGACTTGAATTGGACAAGACTTTGGCGTCGTTCAAGTCCGAGATGGAAAAGGTGATGCAAAATGTGTTCGATCAATTTCGATTGGGACGAACCTCTCAGTTGACACCACCACCATCCCCGGCGCAACAACCACCAAAGGAGCATTCGTCAACTCCACTTTCTGATTCCGAAACCGCAATTCCCATTGTTCACTCTCATCTATGGAAGGCTCGCTGCAAGGAAGTTGCTCGCACATCGATGAGGGCCACTGGAGGAGTGAAGAAACCGCACAGTTCCAGGCTGGGAGCATCCAGGCTCCACAAGACTGGCAAATACCAGAAGCTCAATTTTCGGAGCTTAGCTGCATCTCTTCTGCTAGACGATGCCATCTTGGCTCAGTCGAACCACAACCCTACATCTTTTGGACTGAGGAAATCTGATATGAAAGTTAAGATGGATAGTGGAGATAGTAAAACACCCAGTGAGCTGGAGGATGTTACGGTTAGGCAAGATATTCAAGGACCAAATTCGGGTCAAAATGGGAGAGAATGTCATGCACTCCACCTGCTTGATGAAATGCCTAAATCAAAGGGGTTATGTAGTGTAGGGAGGACTGTTGCAGCTCTTACAAGTATTCGAGACAAAGGTGGGGGACTTGCTCACCAACCTTTAGAACATGCACCTGGGGTTAATTCTGAAGAAGAGGATGAAGATTTTGCAGTGCAGCTGTGTGTTAGAGAATGTAGTAAGTTGATGTTGGCAATTCATAAAAGGGGATTTAGCAGCAAGAAGTACAAAATGGCATTTAACGCTACACTTAACGAAACTTTGTTCGACACATCTGAAGGCACACAAGCTTTAATTGAAGATGGGGAATGTGATGGAGTTGTTCAGGCATTTGAGGGAACCAGGGAATGCCTACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005819 GO:0005856 GO:0006810 GO:0006913 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009524 GO:0009536 GO:0009628 GO:0009651 GO:0012505 GO:0015630 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

388

Amino Acids

42.6

Weight (kDa)

7.65

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	810
AasI	GACNNNNNNGTC	1 cut(s)	283
Acc36I	ACCTGC	1 cut(s)	810
AciI	CCGC	4 cut(s)	35, 176, 432, 524
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	763
AcuI	CTGAAG	2 cut(s)	954, 1101
AcyI	GRCGYC	1 cut(s)	284
AdeI	CACNNNGTG	1 cut(s)	719
AfaI	GTAC	2 cut(s)	83, 1031
AfeI	AGCGCT	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	38, 767
AgsI	TTSAA	4 cut(s)	266, 292, 755, 1103
AjnI	CCWGG	5 cut(s)	90, 533, 548, 919, 1145
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	2 cut(s)	205, 870
AlwI	GGATC	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	115
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	7 cut(s)	178, 251, 471, 599, 857, 961, 1020
ApoI	RAATTY	1 cut(s)	763
AspLEI	GCGC	3 cut(s)	97, 116, 382
AspS9I	GGNCC	2 cut(s)	501, 758
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	150, 322, 890
AvaII	GGWCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	7 cut(s)	165, 238, 458, 586, 869, 973, 1032
BccI	CCATC	6 cut(s)	295, 379, 632, 685, 1100, 1112
BciT130I	CCWGG	5 cut(s)	92, 535, 550, 921, 1147
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	205, 870
BfaI	CTAG	3 cut(s)	117, 188, 614
BfoI	RGCGCY	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	810
BglI	GCCNNNNNGGC	1 cut(s)	629
BisI	GCNGC	8 cut(s)	176, 179, 252, 472, 600, 858, 962, 1021
BlpI	GCTNAGC	1 cut(s)	595
BlsI	GCNGC	8 cut(s)	177, 180, 253, 473, 601, 859, 963, 1022
Bme1390I	CCNGG	6 cut(s)	92, 377, 535, 550, 921, 1147
Bme18I	GGWCC	1 cut(s)	758
BmgT120I	GGNCC	2 cut(s)	501, 758
BmiI	GGNNCC	2 cut(s)	554, 1144
BmrFI	CCNGG	6 cut(s)	92, 377, 535, 550, 921, 1147
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	5 cut(s)	106, 303, 554, 610, 611
BmuI	ACTGGG	1 cut(s)	711
BpmI	CTGGAG	3 cut(s)	74, 528, 746
Bpu1102I	GCTNAGC	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	377
Bsa29I	ATCGAT	2 cut(s)	198, 494
BsaHI	GRCGYC	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	375, 920, 1146
BsaXI	ACNNNNNCTCC	4 cut(s)	389, 419, 772, 802
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 767
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	511, 568, 717
BseBI	CCWGG	5 cut(s)	92, 535, 550, 921, 1147
BseCI	ATCGAT	2 cut(s)	198, 494
BseDI	CCNNGG	3 cut(s)	375, 920, 1146
BseGI	GGATG	4 cut(s)	371, 545, 736, 949
BseLI	CCNNNNNNNGG	2 cut(s)	38, 767
BseMII	CTCAG	3 cut(s)	368, 647, 656
BseNI	ACTGG	3 cut(s)	511, 568, 717
BseRI	GAGGAG	3 cut(s)	156, 223, 525
BseXI	GCAGC	7 cut(s)	165, 238, 458, 586, 869, 973, 1032
BseYI	CCCAGC	2 cut(s)	14, 538
BsgI	GTGCAG	1 cut(s)	980
BshFI	GGCC	1 cut(s)	503
BshVI	ATCGAT	2 cut(s)	198, 494
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	23, 60, 377
BslFI	GGGAC	2 cut(s)	357, 903
BslI	CCNNNNNNNGG	2 cut(s)	38, 767
BsmAI	GTCTC	2 cut(s)	205, 870
BsmFI	GGGAC	2 cut(s)	357, 903
BsmI	GAATGC	2 cut(s)	400, 1157
BsnI	GGCC	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	190, 328
Bsp1720I	GCTNAGC	1 cut(s)	595
BspACI	CCGC	4 cut(s)	35, 176, 432, 524
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	3 cut(s)	367, 646, 657
BspDI	ATCGAT	2 cut(s)	198, 494
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	554, 1144
BspMI	ACCTGC	1 cut(s)	810
BspPI	GGATC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	511, 568, 717
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	375, 920, 1146
BssMI	GATC	2 cut(s)	190, 328
BssNI	GRCGYC	1 cut(s)	284
Bst2UI	CCWGG	5 cut(s)	92, 535, 550, 921, 1147
Bst4CI	ACNGT	3 cut(s)	530, 739, 853
Bst6I	CTCTTC	3 cut(s)	225, 612, 933
BstACI	GRCGYC	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	65, 469, 487
BstDEI	CTNAG	5 cut(s)	78, 354, 595, 633, 665
BstF5I	GGATG	4 cut(s)	371, 545, 736, 949
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	3 cut(s)	97, 116, 382
BstKTI	GATC	2 cut(s)	193, 331
BstMAI	GTCTC	2 cut(s)	205, 870
BstMBI	GATC	2 cut(s)	190, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 629, 1046
BstNI	CCWGG	5 cut(s)	92, 535, 550, 921, 1147
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	6 cut(s)	90, 375, 533, 548, 919, 1145
BstV1I	GCAGC	7 cut(s)	165, 238, 458, 586, 869, 973, 1032
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	2 cut(s)	563, 724
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	2 cut(s)	198, 494
BsuRI	GGCC	1 cut(s)	503
BsuTUI	ATCGAT	2 cut(s)	198, 494
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	4 cut(s)	371, 545, 736, 949
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	3 cut(s)	504, 724, 963
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	3 cut(s)	65, 469, 487
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	3 cut(s)	97, 116, 382
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	501, 758
ClaI	ATCGAT	2 cut(s)	198, 494
CseI	GACGC	2 cut(s)	170, 273
Csp6I	GTAC	2 cut(s)	82, 1030
CviAII	CATG	4 cut(s)	130, 162, 791, 914
CviQI	GTAC	2 cut(s)	82, 1030
DdeI	CTNAG	5 cut(s)	78, 354, 595, 633, 665
DpnI	GATC	2 cut(s)	192, 330
DpnII	GATC	2 cut(s)	190, 328
DraIII	CACNNNGTG	1 cut(s)	719
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
Eam1104I	CTCTTC	3 cut(s)	225, 612, 933
EarI	CTCTTC	3 cut(s)	225, 612, 933
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	758
Eco47III	AGCGCT	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	954, 1101
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	5 cut(s)	90, 533, 548, 919, 1145
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	4 cut(s)	133, 165, 794, 917
FaiI	YATR	8 cut(s)	131, 163, 460, 680, 792, 835, 915, 1005
FaqI	GGGAC	2 cut(s)	357, 903
FatI	CATG	4 cut(s)	129, 161, 790, 913
Fnu4HI	GCNGC	8 cut(s)	176, 179, 252, 472, 600, 858, 962, 1021
FokI	GGATG	4 cut(s)	358, 532, 743, 956
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	8 cut(s)	176, 179, 252, 472, 600, 858, 962, 1021
FspBI	CTAG	3 cut(s)	117, 188, 614
GlaI	GCGC	3 cut(s)	96, 115, 381
GluI	GCNGC	8 cut(s)	176, 179, 252, 472, 600, 858, 962, 1021
GsaI	CCCAGC	2 cut(s)	18, 542
GsuI	CTGGAG	3 cut(s)	74, 528, 746
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	3 cut(s)	23, 60, 377
HgaI	GACGC	2 cut(s)	170, 273
HhaI	GCGC	3 cut(s)	97, 116, 382
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	4 cut(s)	133, 165, 794, 917
Hin6I	GCGC	3 cut(s)	95, 114, 380
HinP1I	GCGC	3 cut(s)	95, 114, 380
HincII	GTYRAC	3 cut(s)	73, 360, 408
HindII	GTYRAC	3 cut(s)	73, 360, 408
HindIII	AAGCTT	1 cut(s)	1092
HinfI	GANTC	3 cut(s)	28, 213, 422
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	3 cut(s)	23, 60, 377
HphI	GGTGA	3 cut(s)	150, 322, 890
Hpy166II	GTNNAC	5 cut(s)	73, 185, 360, 408, 448
Hpy188I	TCNGA	7 cut(s)	298, 421, 427, 591, 676, 934, 1081
Hpy188III	TCNNGA	3 cut(s)	101, 130, 875
Hpy8I	GTNNAC	5 cut(s)	73, 185, 360, 408, 448
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	4 cut(s)	165, 232, 457, 1076
HpyCH4III	ACNGT	3 cut(s)	530, 739, 853
HpyCH4V	TGCA	8 cut(s)	316, 474, 602, 794, 857, 917, 956, 961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 629, 1046
HpyF3I	CTNAG	5 cut(s)	78, 354, 595, 633, 665
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	4 cut(s)	133, 165, 794, 917
HspAI	GCGC	3 cut(s)	95, 114, 380
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	190, 328
LmnI	GCTCC	7 cut(s)	11, 93, 143, 397, 542, 558, 591
Lsp1109I	GCAGC	7 cut(s)	165, 238, 458, 586, 869, 973, 1032
LweI	GCATC	5 cut(s)	106, 303, 554, 610, 611
MaeI	CTAG	3 cut(s)	117, 188, 614
MaeIII	GTNAC	1 cut(s)	733
MalI	GATC	2 cut(s)	192, 330
MboI	GATC	2 cut(s)	190, 328
MboII	GAAGA	7 cut(s)	242, 529, 599, 947, 950, 959, 1115
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	9 cut(s)	219, 266, 332, 435, 583, 763, 928, 999, 1098
MlyI	GAGTC	1 cut(s)	207
MseI	TTAA	7 cut(s)	72, 218, 687, 927, 1044, 1056, 1097
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	178, 964
MspI	CCGG	3 cut(s)	23, 60, 377
MspR9I	CCNGG	6 cut(s)	92, 377, 535, 550, 921, 1147
Mva1269I	GAATGC	2 cut(s)	400, 1157
MvaI	CCWGG	5 cut(s)	92, 535, 550, 921, 1147
MwoI	GCNNNNNNNGC	3 cut(s)	94, 629, 1046
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	2 cut(s)	190, 328
NlaIII	CATG	4 cut(s)	133, 165, 794, 917
NlaIV	GGNNCC	2 cut(s)	554, 1144
NspI	RCATGY	1 cut(s)	917
PagI	TCATGA	1 cut(s)	129
PaqCI	CACCTGC	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PctI	GAATGC	2 cut(s)	400, 1157
PfeI	GAWTC	2 cut(s)	28, 422
PkrI	GCNGC	8 cut(s)	177, 180, 253, 473, 601, 859, 963, 1022
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	5 cut(s)	90, 533, 548, 919, 1145
PspFI	CCCAGC	2 cut(s)	14, 538
PspGI	CCWGG	5 cut(s)	90, 533, 548, 919, 1145
PspN4I	GGNNCC	2 cut(s)	554, 1144
PspPI	GGNCC	2 cut(s)	501, 758
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	964
RsaI	GTAC	2 cut(s)	83, 1031
RsaNI	GTAC	2 cut(s)	82, 1030
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	7 cut(s)	72, 218, 687, 927, 1044, 1056, 1097
SatI	GCNGC	8 cut(s)	176, 179, 252, 472, 600, 858, 962, 1021
Sau3AI	GATC	2 cut(s)	190, 328
Sau96I	GGNCC	2 cut(s)	501, 758
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	6 cut(s)	92, 377, 535, 550, 921, 1147
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	5 cut(s)	106, 303, 554, 610, 611
SinI	GGWCC	1 cut(s)	758
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	9 cut(s)	219, 266, 332, 435, 583, 763, 928, 999, 1098
SsiI	CCGC	4 cut(s)	35, 176, 432, 524
SspMI	CTAG	3 cut(s)	117, 188, 614
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	6 cut(s)	90, 375, 533, 548, 919, 1145
TaaI	ACNGT	3 cut(s)	530, 739, 853
TaqI	TCGA	9 cut(s)	45, 198, 259, 327, 337, 494, 638, 874, 1071
TasI	AATT	9 cut(s)	219, 266, 332, 435, 583, 763, 928, 999, 1098
TatI	WGTACW	1 cut(s)	1029
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	28, 422
Tru1I	TTAA	7 cut(s)	72, 218, 687, 927, 1044, 1056, 1097
Tru9I	TTAA	7 cut(s)	72, 218, 687, 927, 1044, 1056, 1097
TscAI	CASTG	3 cut(s)	511, 724, 963
TseI	GCWGC	7 cut(s)	178, 251, 471, 599, 857, 961, 1020
TspDTI	ATGAA	6 cut(s)	118, 251, 695, 825, 960, 992
TspRI	CASTG	3 cut(s)	511, 724, 963
VpaK11BI	GGWCC	1 cut(s)	758
XapI	RAATTY	1 cut(s)	763
XceI	RCATGY	1 cut(s)	917
XspI	CTAG	3 cut(s)	117, 188, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.